View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11144_low_11 (Length: 411)
Name: NF11144_low_11
Description: NF11144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11144_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 6989047 - 6989447
Alignment:
| Q |
18 |
ccctttttgattaatttaaagaaacctcgccattgtcttgtacctccctcggaatcagaagtgcttgcccttgaacttggtgtatcagattcttgacttc |
117 |
Q |
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| T |
6989047 |
ccctttttgattaatttaaagaaacctcgccattgtcttgtacctccctcggaatcagaagtgcttgcccttgaacttggtgtatcagattcttgacttc |
6989146 |
T |
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| Q |
118 |
taggtgaacactcggattggtctccgtcctcggtctctaaaactgacaagtctaataacatatatggtacattcattcaaacattagtacagcaaataaa |
217 |
Q |
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| T |
6989147 |
taggtgaatactcggattggtctccgttctcagtctctaaaactgacaagtctaataacatatatggtacattcattcaaacattagtacagcaaataaa |
6989246 |
T |
|
| Q |
218 |
taattcaactgttttcttattgaattagt--------------gacggaaaaaatgaaatccgtctctaatttgttcggtaattcaaccnnnnnnnagta |
303 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
6989247 |
taattgaactgttttcttattgaattagtgacggaaaatttgagacggaaaaaatgaaatccgtctctaatttggtcggtaattcaaccttcttttagta |
6989346 |
T |
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| Q |
304 |
gagatggaattaaagagtaaagataaaaggattgaaattaattattaccaatattagaaaaagaatcagaaaatccaggtcgtggtcgtctgtctgtgct |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
6989347 |
gagatggaattaaagagtaaagataaaaggattgaaattaattattaccaatattagaaaaagaatcagaaaatccaggtcgtggtcgtctgcctctgct |
6989446 |
T |
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| Q |
404 |
g |
404 |
Q |
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| T |
6989447 |
g |
6989447 |
T |
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