View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11144_low_2 (Length: 679)

Name: NF11144_low_2
Description: NF11144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11144_low_2
NF11144_low_2
[»] chr8 (1 HSPs)
chr8 (1-669)||(27548180-27548845)


Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 669
Target Start/End: Complemental strand, 27548845 - 27548180
Alignment:
Q  1 cgatcttttccctacaaagtattcagtgtgaaaatgcaatcagtcagaaaaggaaaacaaatctatacatggtggtatgcagaaattcctccaacataaa 100  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  27548845 cgatcttttccctacaaagtattcagtacaaaaatgcaatcagtcagaaaaggaaaacaaatctatacacggtggtatgcagaaattcctccaagataaa 27548746  T
Q  101 ccctgttctaacatgcatctcacttctttatattttcctacgaatacatcacataagcttcaatacttcccnnnnnnn-cttctgagaaactcagtatcc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||         |||||||||||||||||||||    
T  27548745 ccctgttctaacatgcatctcacttctttatattttcctacgaatacatcacataagcttcaacacttccttttttcttcttctgagaaactcagtatcc 27548646  T
Q  200 agaaatcacatactattacaactaaatcaagttaatctagctgaactcattaaacgaagataaagctctcctagtacctatcttttctattcactcaaat 299  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||    
T  27548645 agaaatcacatactattgcaactaaatcatgttaatctagctgaactcatttaaagaagataaagctctcctggtacctatcttttctattcactcgaat 27548546  T
Q  300 ccagcgtccttcataaggaaaatcaaacttcttacaacttggatgaacaaataagcattcattcatactaaagttctgttattttgttaattatattccc 399  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    |||||||||||| |||||||||||||||||| ||    
T  27548545 ccagcatccttcataaggaaaatcaaacttcttacgacttggatgaacaaataagcattgat----actaaagttctgatattttgttaattatatttcc 27548450  T
Q  400 aagaataaaacctaggactgaccatgtgcttaagagactacccttctaccctattaagtcaaatgccaaaggcaggacccataccaacaatatctctctc 499  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  27548449 aagaattaaacctaggaccgaccatgtgcttaagagactacccttctaccctattaagtcaaatgccaaaggcaggacccataccaacaatatttttctc 27548350  T
Q  500 atacgaattgatccaagaattaaacctaggaccggccacgtgcttaagagaacccatccccttgtacttgcacagatacatgtcagtacactcccagttc 599  Q
    ||||| | |||||||||||||||||||||||||| ||| |||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||    
T  27548349 atacgcaatgatccaagaattaaacctaggaccgaccatgtgcttaagagatccgatccccttgtacttgcacaaatacatgtcagtacactcccagttc 27548250  T
Q  600 cttttatattcataaaatccccacttcaaacaaggaaaggatctctgatattcaaaattcatagttcatc 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27548249 cttttatattcataaaatccccacttcaaacaaggaaaggatctctgatattcaaaattcatagttcatc 27548180  T

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