View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11144_low_24 (Length: 256)
Name: NF11144_low_24
Description: NF11144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11144_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 51858189 - 51858414
Alignment:
| Q |
17 |
aaatatttcgcacacaaccattgttgccaacttcgaaatctagcaaacttcgtcacttagatattttgactaacaatcacatctcacacacattcccatc |
116 |
Q |
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| T |
51858189 |
aaatatttcgcacacaaccattgttgccaacttcgaaatctagcaaacttcgtcacttagatattttgactaacaatcacatctcacacacattcccatc |
51858288 |
T |
|
| Q |
117 |
taatgtgttagatttcatgaacttacgagttaaggaaatgtttcaagcacatacactcagtttttctagatatgggcgtggtttaatttcatttgagccc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
51858289 |
taatgtgttagatttcatgaacttacgagttaaggaaatgtttcaagcacatactctcagtttttctagatatgggcgtggtttaattgcatttgagccc |
51858388 |
T |
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| Q |
217 |
cttaatggtgtttataaagtagtgtt |
242 |
Q |
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|||||||||||||||||||||||||| |
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| T |
51858389 |
cttaatggtgtttataaagtagtgtt |
51858414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 49 - 242
Target Start/End: Complemental strand, 34865268 - 34865075
Alignment:
| Q |
49 |
tcgaaatctagcaaacttcgtcacttagatattttgactaacaatcacatctcacacacattcccatctaatgtgttagatttcatgaacttacgagtta |
148 |
Q |
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||||||||| |||||||||||||||||||| || | ||||||| ||| || |||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
34865268 |
tcgaaatctggcaaacttcgtcacttagatgttgtaactaacactcatatgtcacacactttcccgtctaatgtgttagatttcatgaacttacgagtta |
34865169 |
T |
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| Q |
149 |
aggaaatgtttcaagcacatacactcagtttttctagatatgggcgtggtttaatttcatttgagccccttaatggtgtttataaagtagtgtt |
242 |
Q |
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| T |
34865168 |
tggaattgtttcaagcatatactatcaatttttctagagatggaggtgatttaattgcatttgagcccctttctgatgtttataaagtagtgtt |
34865075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 34145347 - 34145460
Alignment:
| Q |
52 |
aaatctagcaaacttcgtcacttagatattttgactaaca-atcacatctcacacacattcccatctaatgtgttagatttcatgaacttacgagttaag |
150 |
Q |
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|||||| | ||| |||||||||||||| | |||||||||| ||| ||| ||||||||| ||||| || |||||||||||||||||||| ||||| | |
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| T |
34145347 |
aaatctggaaaatttcgtcacttagatgtcttgactaacacatc-cataacacacacatacccattcaacgtgttagatttcatgaacttgcgagtaaga |
34145445 |
T |
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| Q |
151 |
gaaatgtttcaagca |
165 |
Q |
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||| ||||||||||| |
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| T |
34145446 |
gaattgtttcaagca |
34145460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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