View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11144_low_26 (Length: 249)
Name: NF11144_low_26
Description: NF11144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11144_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 32468039 - 32467866
Alignment:
| Q |
1 |
tgattttatgtgacaattttttacttaatgnnnnnnnnnnnattcttgtaaaaaattatttttaagaaccgttgacatgtataagtgtggtttaatgatt |
100 |
Q |
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| T |
32468039 |
tgattttatgtgacaattttttacttaat--atttttttttattcttgtaaaaaattatttttaagaaccgttgacatgtataggtgtggtttaatgatt |
32467942 |
T |
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| Q |
101 |
ttgggtttcttttgtatttatagttttgcctcgttacattaatttctctccccttgcaatttatcgaagactatat |
176 |
Q |
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| T |
32467941 |
ttgggtttcttttggatttatagttttgcctcgttacattaatttctctccccttgcaatttatcgaagactatat |
32467866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 32468000 - 32467826
Alignment:
| Q |
42 |
attcttgtaaaaaattatttttaagaaccgttgacatgtataagtgtggtttaatgattttgggtttcttttgtatttatagttttgcctcgttacatta |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32468000 |
attcttgtaaaaaattatttttaagaaccgttgacatgtataggtgtggtttaatgattttgggtttcttttggatttatagttttgcctcgttacatta |
32467901 |
T |
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| Q |
142 |
atttctctccccttgcaatttatcgaagactatattcatcgaagactatataaaaccaaccttctttgatgaaaaaatacatctcttttct |
232 |
Q |
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| T |
32467900 |
atttctctccccttgcaatttatcgaagactata----------------taaaaccaaccttctttgatgaaaaaatatatctcttttct |
32467826 |
T |
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