View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11144_low_29 (Length: 244)
Name: NF11144_low_29
Description: NF11144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11144_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 15913713 - 15913925
Alignment:
| Q |
17 |
tacaaggaaaacaactcaaagcaaaagaaaaagcggatgttataataacaggtnnnnnnnnnnnnggattgagttggtaatcaaaatnnnnnnntgatat |
116 |
Q |
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| T |
15913713 |
tacaaggaagacaactcaaagcaaaagaagaagaggatgttataataacaggtaaaaaaaata--gaattgagttggtaatcaaaataaaagt-tgatat |
15913809 |
T |
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| Q |
117 |
atttcgacttcaaccaccaataagattgaagcttagtccttaattataagagaaaaatgtatacttagtccaaattttatatcaaatacatcatttttct |
216 |
Q |
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| T |
15913810 |
attttaagttcaaccaccaataagattgaagcttagtccttaattataagagaaaaatgtatacttaatccaacttttatatcaaatacatcatttttct |
15913909 |
T |
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| Q |
217 |
tttgtttataccatct |
232 |
Q |
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|||||||||||||||| |
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| T |
15913910 |
tttgtttataccatct |
15913925 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 27303201 - 27303165
Alignment:
| Q |
115 |
atatttcgacttcaaccaccaataagattgaagctta |
151 |
Q |
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| T |
27303201 |
atatttcgacttcaaccaccaataagatcaaagctta |
27303165 |
T |
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