View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11144_low_3 (Length: 625)
Name: NF11144_low_3
Description: NF11144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11144_low_3 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 76 - 414
Target Start/End: Complemental strand, 13218406 - 13218068
Alignment:
| Q |
76 |
actgcaataattcttgctaagaagaatgcccacgttgtggcaattccacccagaaggtaatgggttactcctacagcacgtccctgtacaatgctcaagg |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13218406 |
actgcaataattcttgctaagaagaatgcccacgttgtggcaattccacccagaaggtaatgggttactcctacagcacgtccctgtacaatgctcaagg |
13218307 |
T |
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| Q |
176 |
ctctaggctgagtagcaggagcaacttttaatttattatgagcccaaacgatggattcgataagttcttgccaataaccacgcccgctgaatagaaacat |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13218306 |
ctctaggctgagtagcaggagcaacttttaatttattatgagcccaaacgatggattcaataagttcttgccaataaccacgcccgctgaatagaaacat |
13218207 |
T |
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| Q |
276 |
taaactaaaagcccatacaaaatgggcacctaagnnnnnnngaccatatgcagataatgaggaaccataagactgaattacctgggatgcctgcgcccat |
375 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13218206 |
taaactaaaagcccatacaaaatgggcacctaagaaaaaaagaccatatgcagataatgaggaaccataagactgaattacctgggatgcctgcgcccat |
13218107 |
T |
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| Q |
376 |
aagaaatcgcggagccacccattaatggtaatcgaactc |
414 |
Q |
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| T |
13218106 |
aagaaatcgcggagccacccattaatggtaatcgaactc |
13218068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 201 - 362
Target Start/End: Original strand, 54180853 - 54181014
Alignment:
| Q |
201 |
ttttaatttattatgagcccaaacgatggattcgataagttcttgccaataaccacgcccgctgaatagaaacattaaactaaaagcccatacaaaatgg |
300 |
Q |
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| T |
54180853 |
ttttaatttattatgagcccaaacgatggattcaataagttcttgccaataaccacgcccgctgaatagaaacattaaactaaaagcccatacaaaatgg |
54180952 |
T |
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| Q |
301 |
gcacctaagnnnnnnngaccatatgcagataatgaggaaccataagactgaattacctggga |
362 |
Q |
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| T |
54180953 |
gcacctaagaaaaaaagaccatatgcagataatgaggaaccataagactgaattacctggga |
54181014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 291 - 414
Target Start/End: Original strand, 45172776 - 45172894
Alignment:
| Q |
291 |
tacaaaatgggcacctaagnnnnnnngaccatatgcagataatgaggaaccataagactgaattacctgggatgcctgcgcccataagaaatcgcggagc |
390 |
Q |
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|||||||||| |||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||| |||||| |
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| T |
45172776 |
tacaaaatggccacctaagaaaaaaagaccatatgcagattatgaggaaccataagactg-----ctcgggatgcctgctcccataagaaatcacggagc |
45172870 |
T |
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| Q |
391 |
cacccattaatggtaatcgaactc |
414 |
Q |
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||| ||||||||| |||||||| |
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| T |
45172871 |
cacttgttaatggtactcgaactc |
45172894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 76 - 414
Target Start/End: Original strand, 239303 - 239641
Alignment:
| Q |
76 |
actgcaataattcttgctaagaagaatgcccacgttgtggcaattccacccagaaggtaatgggttactcctacagcacgtccctgtacaatgctcaagg |
175 |
Q |
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|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
239303 |
actgcaataattctcgctaagaagaatgcccatgtcgtggcaattccacccagaaggtaatgggttactcctacagcacgtccttgtataatgctcaagg |
239402 |
T |
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| Q |
176 |
ctctaggctgagtagcaggagcaacttttaatttattatgagcccaaacgatggattcgataagttcttgccaataaccacgcccgctgaatagaaacat |
275 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||| |||||| |
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| T |
239403 |
ctctaggctgagtagcaggagcaacttttaatttgttatgagcccaaacgatagattcaatgagttcttgccaataaccacggccgctgaataaaaacat |
239502 |
T |
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| Q |
276 |
taaactaaaagcccatacaaaatgggcacctaagnnnnnnngaccatatgcagataatgaggaaccataagactgaattacctgggatgcctgcgcccat |
375 |
Q |
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|||||| || ||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| || || |||||||| ||||| |
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| T |
239503 |
taaactgaaggcccagacaaaatgagcacctaagaaaaaaagaccatatgcagataatgaagaaccataagactgaatgacttgcgatgcctgtgcccac |
239602 |
T |
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| Q |
376 |
aagaaatcgcggagccacccattaatggtaatcgaactc |
414 |
Q |
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|||||||| || |||||||||||||| ||||| |||||| |
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| T |
239603 |
aagaaatctcgaagccacccattaatcgtaatggaactc |
239641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 45273434 - 45273528
Alignment:
| Q |
183 |
ctgagtagcaggagcaacttttaatttattatgagcccaaacgatggattcgataagttcttgccaataaccacgcccgctgaatagaaacatta |
277 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
45273434 |
ctgagtaacaggagcaacttttaatttattatgagcccaaacgatggattcaataagtttatgccaataaccacggccgctgaatagaaacatta |
45273528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 45269877 - 45269966
Alignment:
| Q |
188 |
tagcaggagcaacttttaatttattatgagcccaaacgatggattcgataagttcttgccaataaccacgcccgctgaatagaaacatta |
277 |
Q |
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| T |
45269877 |
tagcaggagaaccttttaatttattatgagcccaaacgatggattctataagttcttgccaataaccacgcccgatgaatagaaacatta |
45269966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 28243425 - 28243343
Alignment:
| Q |
173 |
aggctctaggctgagtagcaggagcaacttttaatttattatgagcccaaacgatggattcgataagttcttgccaataacca |
255 |
Q |
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|||||||||| ||||||| ||||||| ||| ||||||||||||| |||||| || |||||| | ||||| ||| | ||||||| |
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| T |
28243425 |
aggctctaggttgagtagtaggagcagcttataatttattatgaccccaaatgacggattcaacaagtttttggcgataacca |
28243343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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