View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11144_low_30 (Length: 240)

Name: NF11144_low_30
Description: NF11144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11144_low_30
NF11144_low_30
[»] chr8 (4 HSPs)
chr8 (23-240)||(27547986-27548203)
chr8 (24-85)||(9936806-9936867)
chr8 (30-90)||(31548294-31548354)
chr8 (43-128)||(1433356-1433441)
[»] chr7 (20 HSPs)
chr7 (23-91)||(31808509-31808576)
chr7 (30-91)||(2525844-2525905)
chr7 (32-91)||(35238184-35238243)
chr7 (18-91)||(37824672-37824745)
chr7 (18-83)||(38134414-38134479)
chr7 (43-127)||(10893311-10893395)
chr7 (14-90)||(22484007-22484083)
chr7 (41-89)||(44172892-44172940)
chr7 (43-90)||(10893870-10893917)
chr7 (18-121)||(12843004-12843107)
chr7 (18-81)||(17930449-17930512)
chr7 (42-81)||(33668659-33668698)
chr7 (32-90)||(30013195-30013253)
chr7 (32-88)||(16827639-16827696)
chr7 (41-90)||(24146825-24146874)
chr7 (29-74)||(27980793-27980838)
chr7 (50-91)||(48964062-48964103)
chr7 (72-128)||(1745205-1745261)
chr7 (39-83)||(18678155-18678199)
chr7 (41-89)||(36314629-36314677)
[»] chr5 (8 HSPs)
chr5 (18-91)||(28296314-28296387)
chr5 (43-128)||(27253296-27253381)
chr5 (24-89)||(38749565-38749630)
chr5 (25-76)||(11596470-11596521)
chr5 (25-83)||(23287357-23287415)
chr5 (23-128)||(36611450-36611555)
chr5 (46-90)||(309061-309105)
chr5 (24-76)||(2039864-2039916)
[»] chr1 (9 HSPs)
chr1 (23-96)||(21057774-21057847)
chr1 (24-96)||(19637760-19637832)
chr1 (25-96)||(7988446-7988517)
chr1 (41-91)||(31667434-31667484)
chr1 (32-90)||(33202903-33202961)
chr1 (14-89)||(14332391-14332465)
chr1 (24-83)||(26462653-26462712)
chr1 (13-91)||(6427331-6427409)
chr1 (41-85)||(29415757-29415801)
[»] scaffold0022 (1 HSPs)
scaffold0022 (24-91)||(99885-99952)
[»] chr2 (6 HSPs)
chr2 (33-96)||(18570973-18571036)
chr2 (33-83)||(16630796-16630846)
chr2 (27-91)||(31026690-31026754)
chr2 (18-96)||(43586000-43586078)
chr2 (24-96)||(30298444-30298514)
chr2 (42-98)||(34006825-34006881)
[»] chr3 (3 HSPs)
chr3 (15-89)||(21478666-21478740)
chr3 (18-92)||(39682870-39682944)
chr3 (24-81)||(34409352-34409409)
[»] chr6 (11 HSPs)
chr6 (18-95)||(20371106-20371183)
chr6 (12-62)||(10760870-10760920)
chr6 (23-89)||(15443686-15443752)
chr6 (18-79)||(8623191-8623252)
chr6 (41-89)||(6284663-6284711)
chr6 (25-85)||(10031563-10031623)
chr6 (43-83)||(10157995-10158035)
chr6 (24-76)||(13211296-13211348)
chr6 (26-90)||(13595450-13595514)
chr6 (30-90)||(18612619-18612679)
chr6 (41-89)||(29711271-29711319)
[»] chr4 (11 HSPs)
chr4 (25-90)||(3568851-3568916)
chr4 (41-89)||(25390888-25390936)
chr4 (32-83)||(14465302-14465353)
chr4 (32-83)||(18513249-18513300)
chr4 (18-89)||(37496690-37496761)
chr4 (50-96)||(13307895-13307941)
chr4 (24-81)||(15969345-15969402)
chr4 (23-83)||(22799901-22799962)
chr4 (24-76)||(5654606-5654658)
chr4 (31-91)||(43368078-43368138)
chr4 (14-90)||(44362649-44362724)
[»] scaffold0024 (1 HSPs)
scaffold0024 (18-89)||(18110-18181)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 27547986 - 27548203
Alignment:
Q  23 tgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcgaacactagatacgcctttgatcaaaagtgtc 122  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||    
T  27547986 tgacacgtcgacaccgaaaatgattttagaaaatgacataagtcaatataatcacatgtgttggtgttgaacactggatacacctttgatcaaaagtgtc 27548085  T
Q  123 ggtgcttcagtgtaggatgctattcaagatatccaacagtgagacattgatattttgatccaaaatgttaatacagttgtagaggtcattgagtgatgaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27548086 ggtgcttcagtgtaggatgctattcaagatatccaacagtgagacattgatattttgatccaaaatgttaatacagttgtagaggtcattgagtgatgaa 27548185  T
Q  223 ctatgaattttgaatatc 240  Q
    ||||||||||||||||||    
T  27548186 ctatgaattttgaatatc 27548203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 9936806 - 9936867
Alignment:
Q  24 gacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttg 85  Q
    |||||||||||| ||| |||||||| ||||||||| |||| |||||||||||| ||||||||    
T  9936806 gacacgtcgacatcgataataatttaagaaaatgatataattcaatataatcatatgtgttg 9936867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 31548354 - 31548294
Alignment:
Q  30 tcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtc 90  Q
    |||||||||| ||| |||| | |||||||||||| ||||| ||||||||||||| ||||||    
T  31548354 tcgacaccgataattatttgataaaatgacataattcaatgtaatcacatgtgtcggtgtc 31548294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 1433356 - 1433441
Alignment:
Q  43 taattttagaaaatgacataagtcaatataatcacatgtgttggtgtcgaacactagatacgcctttgatcaaaagtgtcggtgct 128  Q
    |||||| ||||||||||||||  |||| |||| ||||| || ||||||| ||||  ||||| | || ||||||||||||| |||||    
T  1433356 taatttgagaaaatgacataatccaatgtaataacatgcgtcggtgtcggacaccggatacacattcgatcaaaagtgtcagtgct 1433441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 31808576 - 31808509
Alignment:
Q  23 tgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcg 91  Q
    |||||||||| |||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||    
T  31808576 tgacacgtcg-caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgtcg 31808509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 2525905 - 2525844
Alignment:
Q  30 tcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcg 91  Q
    |||||||||| |||||||| || ||||||||||| |||||||||||| |||||| |||||||    
T  2525905 tcgacaccgataataatttgagcaaatgacataattcaatataatcatatgtgtcggtgtcg 2525844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 35238243 - 35238184
Alignment:
Q  32 gacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcg 91  Q
    |||||||| |||| ||| |||||||||||||| |||||||||||||| ||||| ||||||    
T  35238243 gacaccgataatattttgagaaaatgacataattcaatataatcacacgtgttagtgtcg 35238184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 37824745 - 37824672
Alignment:
Q  18 gacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcg 91  Q
    |||||||||||||| || || | ||||||||||||||||||||||| ||||| ||| ||  ||||||| |||||    
T  37824745 gacattgacacgtccacgcctataataattttagaaaatgacataattcaatttaaacaagtgtgttgatgtcg 37824672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 38134479 - 38134414
Alignment:
Q  18 gacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgt 83  Q
    ||||| |||| || |||||||| |||||||| |||||||||||||| ||||| |||||| ||||||    
T  38134479 gacatggacatgttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 10893395 - 10893311
Alignment:
Q  43 taattttagaaaatgacataagtcaatataatcacatgtgttggtgtcgaacactagatacgcctttgatcaaaagtgtcggtgc 127  Q
    |||||| |||||||||||||| | ||| ||||| ||||||||||| ||| |||| ||| |||||||  |||| |||||| |||||    
T  10893395 taatttgagaaaatgacataattgaatgtaatcgcatgtgttggtatcggacaccagacacgccttcaatcagaagtgttggtgc 10893311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 22484007 - 22484083
Alignment:
Q  14 cacagacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtc 90  Q
    |||||||| ||||||| ||||||||  ||||||||||||||||  ||||| ||| |||||| | |||||| ||||||    
T  22484007 cacagacactgacacgccgacaccgctaataattttagaaaattgcataattcagtataattatatgtgtcggtgtc 22484083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 44172940 - 44172892
Alignment:
Q  41 aataattttagaaaatgacataagtcaatataatcacatgtgttggtgt 89  Q
    |||||||| |||||||||||||| ||||| |||||||||||||| ||||    
T  44172940 aataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgt 44172892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 10893917 - 10893870
Alignment:
Q  43 taattttagaaaatgacataagtcaatataatcacatgtgttggtgtc 90  Q
    |||||| |||||||||||||| | ||| ||||||||||||||||||||    
T  10893917 taatttaagaaaatgacataattgaatgtaatcacatgtgttggtgtc 10893870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 12843107 - 12843004
Alignment:
Q  18 gacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcgaacactagatacgcctttgatcaaaa 117  Q
    |||| ||||||||| | ||||  | |||||| |||||||||||||| | |||||||||||| ||||  | |||| |||| ||| || |||||||||| ||    
T  12843107 gacactgacacgtcaagaccggtattaatttgagaaaatgacataattgaatataatcacacgtgtctgggtcggacacgagacacacctttgatcagaa 12843008  T
Q  118 gtgt 121  Q
    ||||    
T  12843007 gtgt 12843004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 17930449 - 17930512
Alignment:
Q  18 gacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgt 81  Q
    |||||||||||||||||||| | | |||||| |||||||||||| | ||||| | |||||||||    
T  17930449 gacattgacacgtcgacaccaatactaatttaagaaaatgacatcattcaatgtcatcacatgt 17930512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 33668698 - 33668659
Alignment:
Q  42 ataattttagaaaatgacataagtcaatataatcacatgt 81  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  33668698 ataattttagaaaatgacataatttaatataatcacatgt 33668659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 30013195 - 30013253
Alignment:
Q  32 gacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtc 90  Q
    |||||| | |||||| | |||||||||| ||| |||||||||||||||||||| |||||    
T  30013195 gacaccaataataatatgagaaaatgacgtaattcaatataatcacatgtgtttgtgtc 30013253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 16827639 - 16827696
Alignment:
Q  32 gacaccga-aaataattttagaaaatgacataagtcaatataatcacatgtgttggtg 88  Q
    |||||||| ||||||||| || ||||||||| | ||||| ||||||||||||||||||    
T  16827639 gacaccgataaataatttgagcaaatgacatgattcaatgtaatcacatgtgttggtg 16827696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 24146825 - 24146874
Alignment:
Q  41 aataattttagaaaatgacataagtcaatataatcacatgtgttggtgtc 90  Q
    |||||||||||||||| |||||| |||||||||| | |||||| ||||||    
T  24146825 aataattttagaaaatcacataattcaatataattatatgtgtcggtgtc 24146874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 27980793 - 27980838
Alignment:
Q  29 gtcgacaccgaaaataattttagaaaatgacataagtcaatataat 74  Q
    ||||| |||||||||||||||| |||||||||||| ||||| ||||    
T  27980793 gtcgataccgaaaataattttaaaaaatgacataattcaatgtaat 27980838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 48964103 - 48964062
Alignment:
Q  50 agaaaatgacataagtcaatataatcacatgtgttggtgtcg 91  Q
    |||||||||||||| ||||| |||||||| ||||||||||||    
T  48964103 agaaaatgacataattcaatttaatcacaagtgttggtgtcg 48964062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 1745205 - 1745261
Alignment:
Q  72 aatcacatgtgttggtgtcgaacactagatacgcctttgatcaaaagtgtcggtgct 128  Q
    |||||||||||||||||||  |||||||||| | |||  ||||||||| ||||||||    
T  1745205 aatcacatgtgttggtgtcagacactagatagggcttctatcaaaagtttcggtgct 1745261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 18678155 - 18678199
Alignment:
Q  39 aaaataattttagaaaatgacataagtcaatataatcacatgtgt 83  Q
    |||||| ||| |||||||||||||| ||||||||||||| |||||    
T  18678155 aaaatattttgagaaaatgacataattcaatataatcacgtgtgt 18678199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 36314677 - 36314629
Alignment:
Q  41 aataattttagaaaatgacataagtcaatataatcacatgtgttggtgt 89  Q
    |||||||| |||||||||||||  ||||| |||||| ||||||||||||    
T  36314677 aataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgt 36314629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 28296314 - 28296387
Alignment:
Q  18 gacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcg 91  Q
    ||||| |||| ||||||||||| |||||||| |||||||||||||| ||||| || ||| ||||||||||||||    
T  28296314 gacatggacaagtcgacaccgataataatttgagaaaatgacataattcaatgtactcatatgtgttggtgtcg 28296387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 27253296 - 27253381
Alignment:
Q  43 taattttagaaaatgacataagtcaatataatcacatgtgttggtgtcgaacactagatacgcctttgatcaaaagtgtcggtgct 128  Q
    |||||| | |||||| ||||| | ||| |||||||||||||  |||||  |||||||||||| |||  ||||||||||||||||||    
T  27253296 taatttgaaaaaatgtcataattgaatgtaatcacatgtgtcagtgtctgacactagatacggcttcaatcaaaagtgtcggtgct 27253381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 38749630 - 38749565
Alignment:
Q  24 gacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgt 89  Q
    |||| ||||||||||| |||||||| | |||||||||||| ||||| |||| | ||||||||||||    
T  38749630 gacatgtcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgt 38749565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 11596521 - 11596470
Alignment:
Q  25 acacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatca 76  Q
    ||||||||| ||||| |||||||| |||||||||||||| ||||| ||||||    
T  11596521 acacgtcgataccgataataatttgagaaaatgacataattcaatgtaatca 11596470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 23287415 - 23287357
Alignment:
Q  25 acacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgt 83  Q
    ||||||||||||| | ||||||||  ||||||||||||| |||||||||| | ||||||    
T  23287415 acacgtcgacaccaataataatttaggaaaatgacataattcaatataattatatgtgt 23287357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 36611450 - 36611555
Alignment:
Q  23 tgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcgaacactagatacgcctttgatcaaaagtgtc 122  Q
    ||||| || |||||||| | || ||| |||||||||||||| | ||  |||| |||||||||| ||||| | ||| || || |||||||||| || ||||    
T  36611450 tgacatgttgacaccgatagtagtttaagaaaatgacataattgaacgtaatgacatgtgttgatgtcggatactggacactcctttgatcagaaatgtc 36611549  T
Q  123 ggtgct 128  Q
    ||||||    
T  36611550 ggtgct 36611555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 309061 - 309105
Alignment:
Q  46 ttttagaaaatgacataagtcaatataatcacatgtgttggtgtc 90  Q
    |||||||||||||||||| | |||||||| |||||||| ||||||    
T  309061 ttttagaaaatgacataatttaatataatgacatgtgtcggtgtc 309105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 2039916 - 2039864
Alignment:
Q  24 gacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatca 76  Q
    |||||||||||||||  |||||||| |||||||||||| | ||||| ||||||    
T  2039916 gacacgtcgacaccggtaataatttgagaaaatgacatgattcaatgtaatca 2039864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 21057774 - 21057847
Alignment:
Q  23 tgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcgaacac 96  Q
    ||||||||||||||||  |||||||||||||||| |||||| | ||| ||||| |||||||| |||||||||||    
T  21057774 tgacacgtcgacaccgctaataattttagaaaataacataattgaatgtaatcgcatgtgttagtgtcgaacac 21057847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 19637760 - 19637832
Alignment:
Q  24 gacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcgaacac 96  Q
    ||||| |||||||||| |||||||| |||||||||||| | ||||| |||||| |||||| ||||||| ||||    
T  19637760 gacacatcgacaccgataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggacac 19637832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 7988517 - 7988446
Alignment:
Q  25 acacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcgaacac 96  Q
    |||||||||||| || |||||||| ||||| |||||||| ||||| |||||| | |||||||||||| ||||    
T  7988517 acacgtcgacactgataataatttaagaaagtgacataattcaatgtaatcataagtgttggtgtcggacac 7988446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 31667434 - 31667484
Alignment:
Q  41 aataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcg 91  Q
    ||||||||||||||||||||||| | ||| ||||||||||||| |||||||    
T  31667434 aataattttagaaaatgacataattaaatgtaatcacatgtgtcggtgtcg 31667484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 33202903 - 33202961
Alignment:
Q  32 gacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtc 90  Q
    |||||||| |||||||||| |||||||||||| ||||| |||||| |||| ||||||||    
T  33202903 gacaccgataataattttaaaaaatgacataaatcaatgtaatcatatgttttggtgtc 33202961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 14332391 - 14332465
Alignment:
Q  14 cacagacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgt 89  Q
    |||||||| | ||| ||||||||||| || ||||| |||||||||||||| ||||| ||||||||| ||| |||||    
T  14332391 cacagacactaacaagtcgacaccgataa-aatttgagaaaatgacataattcaatgtaatcacatatgtcggtgt 14332465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 26462712 - 26462653
Alignment:
Q  24 gacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgt 83  Q
    ||||||||||||| || |||||||| ||||||||| |||| | ||| |||||||||||||    
T  26462712 gacacgtcgacactgataataatttaagaaaatgaaataattgaatgtaatcacatgtgt 26462653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 6427331 - 6427409
Alignment:
Q  13 gcacagacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcg 91  Q
    |||| |||| ||||||| | ||||||  |||||||| ||||||| |||||| ||||| |||| | ||||||||||||||    
T  6427331 gcacggacactgacacgccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcg 6427409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 29415757 - 29415801
Alignment:
Q  41 aataattttagaaaatgacataagtcaatataatcacatgtgttg 85  Q
    |||||||| |||||||||||||| |||  ||||||||||||||||    
T  29415757 aataatttaagaaaatgacataattcagcataatcacatgtgttg 29415801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 99885 - 99952
Alignment:
Q  24 gacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcg 91  Q
    |||| ||||||||||| |||||||||||||||| |||||| ||||| |||| | ||||||||||||||    
T  99885 gacatgtcgacaccgataataattttagaaaataacataattcaatgtaattatatgtgttggtgtcg 99952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 18570973 - 18571036
Alignment:
Q  33 acaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcgaacac 96  Q
    ||||||| |||||||| |||||||||||||| ||||| |||||| ||||||  |||||||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgaacac 18571036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 16630796 - 16630846
Alignment:
Q  33 acaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgt 83  Q
    ||||||| |||||||| |||||||||||||| ||||| |||||||||||||    
T  16630796 acaccgataataatttaagaaaatgacataattcaatttaatcacatgtgt 16630846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 31026690 - 31026754
Alignment:
Q  27 acgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcg 91  Q
    ||||||| ||||| |||||||| |||||||||||||| ||||| |||||| || ||| |||||||    
T  31026690 acgtcgagaccgataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgtcg 31026754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 43586078 - 43586000
Alignment:
Q  18 gacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcgaacac 96  Q
    |||| ||||||||| |||| || || | ||| |||||||||||||| ||||| |||||||| |||| ||||||| ||||    
T  43586078 gacactgacacgtcaacacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcggacac 43586000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 30298514 - 30298444
Alignment:
Q  24 gacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcgaacac 96  Q
    |||||||||||||||| |||||||| | |||||||||||| ||| | ||||  ||||||| ||||||| ||||    
T  30298514 gacacgtcgacaccgataataatttaataaaatgacataattcagtgtaat--catgtgtcggtgtcggacac 30298444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 34006825 - 34006881
Alignment:
Q  42 ataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcgaacacta 98  Q
    |||||||||| |||||| |||| | ||||||||||||||||| ||||| | ||||||    
T  34006825 ataattttagtaaatgatataattgaatataatcacatgtgtcggtgttggacacta 34006881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 21478666 - 21478740
Alignment:
Q  15 acagacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgt 89  Q
    |||||||| |||| ||||||||| | |||||||| | || ||||||||| ||||| |||||| ||||||||||||    
T  21478666 acagacatggacatgtcgacaccaataataatttcacaagatgacataaatcaatgtaatcatatgtgttggtgt 21478740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 39682870 - 39682944
Alignment:
Q  18 gacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcga 92  Q
    |||| |||||||| ||||| || |||||||| | |||||| ||||  |||| ||||||| |||||||||||||||    
T  39682870 gacactgacacgtggacacggataataatttaaaaaaatgtcatagttcaacataatcatatgtgttggtgtcga 39682944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 34409409 - 34409352
Alignment:
Q  24 gacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgt 81  Q
    |||||||| ||||||| |||| ||  |||||||||||||| ||||| |||||||||||    
T  34409409 gacacgtcaacaccgataatacttcgagaaaatgacataattcaatgtaatcacatgt 34409352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 20371183 - 20371106
Alignment:
Q  18 gacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcgaaca 95  Q
    |||||||||||| ||||||||  |||||||| ||||||| |||||| ||||| | || | |||||| |||||||||||    
T  20371183 gacattgacacgccgacaccgctaataatttgagaaaatcacataactcaatgtgattatatgtgtcggtgtcgaaca 20371106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 10760920 - 10760870
Alignment:
Q  12 agcacagacattgacacgtcgacaccgaaaataattttagaaaatgacata 62  Q
    ||||| |||| |||||||||||||| || |||||||| |||||||||||||    
T  10760920 agcacggacactgacacgtcgacactgataataatttgagaaaatgacata 10760870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 15443686 - 15443752
Alignment:
Q  23 tgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgt 89  Q
    ||||||||||||| | | |||||||| ||||||| |||||| |||||||||| | || |||||||||    
T  15443686 tgacacgtcgacatcaataataatttgagaaaataacataattcaatataattatatatgttggtgt 15443752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 8623191 - 8623252
Alignment:
Q  18 gacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacat 79  Q
    |||| |||||||| |||||||| || |||||||||||||||||| | | ||| |||||||||    
T  8623191 gacactgacacgttgacaccgataacaattttagaaaatgacatcattgaatgtaatcacat 8623252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 6284711 - 6284663
Alignment:
Q  41 aataattttagaaaatgacataagtcaatataatcacatgtgttggtgt 89  Q
    |||||||| |||||||||||||| | ||| |||||||||||||| ||||    
T  6284711 aataatttgagaaaatgacataattgaatttaatcacatgtgttagtgt 6284663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 10031563 - 10031623
Alignment:
Q  25 acacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttg 85  Q
    |||||| |||||||| || | ||| |||||||||||||| ||||| |||||||| ||||||    
T  10031563 acacgttgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 10031623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 10157995 - 10158035
Alignment:
Q  43 taattttagaaaatgacataagtcaatataatcacatgtgt 83  Q
    |||||| |||||||||||||| ||||| |||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgt 10158035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 13211348 - 13211296
Alignment:
Q  24 gacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatca 76  Q
    ||||||||||||  || |||||||| |||||||||||||| | ||||||||||    
T  13211348 gacacgtcgacattgataataatttgagaaaatgacataatttaatataatca 13211296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 13595450 - 13595514
Alignment:
Q  26 cacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtc 90  Q
    |||||| ||| ||| |||||||  ||||||| ||| || ||||||||||||||||||| ||||||    
T  13595450 cacgtcaacagcgataataattcgagaaaattacacaattcaatataatcacatgtgtaggtgtc 13595514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 18612619 - 18612679
Alignment:
Q  30 tcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtc 90  Q
    |||||| ||| ||||||| | ||||||| ||||| ||||| |||||| |||||||||||||    
T  18612619 tcgacatcgataataattcttgaaaatgtcataattcaatgtaatcatatgtgttggtgtc 18612679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 29711271 - 29711319
Alignment:
Q  41 aataattttagaaaatgacataagtcaatataatcacatgtgttggtgt 89  Q
    |||||||| |||||||||||||| ||| ||||| ||||||||| |||||    
T  29711271 aataatttgagaaaatgacataattcattataaccacatgtgtcggtgt 29711319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 3568916 - 3568851
Alignment:
Q  25 acacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtc 90  Q
    ||||||||||||||||| |||||| |||||||||||||  |||||  ||||| |||||| ||||||    
T  3568916 acacgtcgacaccgaaagtaatttgagaaaatgacatagttcaattaaatcatatgtgtcggtgtc 3568851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 25390936 - 25390888
Alignment:
Q  41 aataattttagaaaatgacataagtcaatataatcacatgtgttggtgt 89  Q
    ||||||||||||||||||||||| ||||||||| || |||||| |||||    
T  25390936 aataattttagaaaatgacataattcaatataaccatatgtgtcggtgt 25390888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 14465353 - 14465302
Alignment:
Q  32 gacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgt 83  Q
    |||||||| |||||||| |||||||||||||| ||||| |||||| ||||||    
T  14465353 gacaccgataataatttgagaaaatgacataattcaatttaatcatatgtgt 14465302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 18513300 - 18513249
Alignment:
Q  32 gacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgt 83  Q
    |||||||| |||||||| |||||||||||||| ||||| |||||| ||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 18513249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 37496690 - 37496761
Alignment:
Q  18 gacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgt 89  Q
    |||| |||||||| |||||||| |||  ||| |||||||||||||| ||||| |||||||| |||| |||||    
T  37496690 gacactgacacgttgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcggtgt 37496761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 13307895 - 13307941
Alignment:
Q  50 agaaaatgacataagtcaatataatcacatgtgttggtgtcgaacac 96  Q
    |||||||||||||| ||||| |||||||| |||||||||||| ||||    
T  13307895 agaaaatgacataattcaatgtaatcacaagtgttggtgtcggacac 13307941  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 15969345 - 15969402
Alignment:
Q  24 gacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgt 81  Q
    ||||||||||||| || |||||||||| ||||| |||||| | ||| |||||||||||    
T  15969345 gacacgtcgacactgataataattttaaaaaataacataatttaatgtaatcacatgt 15969402  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 22799962 - 22799901
Alignment:
Q  23 tgacacgtcgacaccgaaaataatttt-agaaaatgacataagtcaatataatcacatgtgt 83  Q
    ||||||||||||| | | ||||||||| |||||||||||||| ||||| |||||||| ||||    
T  22799962 tgacacgtcgacaacaagaataatttttagaaaatgacataattcaatgtaatcacacgtgt 22799901  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 5654658 - 5654606
Alignment:
Q  24 gacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatca 76  Q
    |||| |||||||| || |||||||| |||||||||||||| ||||| ||||||    
T  5654658 gacatgtcgacactgataataatttgagaaaatgacataattcaatgtaatca 5654606  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 43368078 - 43368138
Alignment:
Q  31 cgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtcg 91  Q
    ||||||||| |||||||| ||||||||||| |  | ||||| |||| ||||||||||||||    
T  43368078 cgacaccgataataatttaagaaaatgacacagtttaatatgatcatatgtgttggtgtcg 43368138  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 44362649 - 44362724
Alignment:
Q  14 cacagacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgtc 90  Q
    ||||||||| ||||| | |||||||| || | ||| |||||||||||||| | ||| |||||||| |||||||||||    
T  44362649 cacagacatggacacct-gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 44362724  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 18181 - 18110
Alignment:
Q  18 gacattgacacgtcgacaccgaaaataattttagaaaatgacataagtcaatataatcacatgtgttggtgt 89  Q
    |||| ||||||||||||||||| || | ||| ||||||| |||||| ||||| ||||| || ||||||||||    
T  18181 gacactgacacgtcgacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtgttggtgt 18110  T

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