View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11144_low_32 (Length: 209)
Name: NF11144_low_32
Description: NF11144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11144_low_32 |
 | |
|
| [»] chr4 (8 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 24088616 - 24088824
Alignment:
| Q |
1 |
ttgtacaaatatcatttctctagctatctggatctattctcgcaaaactgacatacaaatagataattggcttcatcaacatacatacattgcctgcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24088616 |
ttgtacaaatatcatttctctagctatctggatctattcttgcaaaactgacatacaaatagataattggcttcatcaacatacatacattgcctgcaaa |
24088715 |
T |
|
| Q |
101 |
actacgctttaaagctaaacgaatttattcttacaacaccggcttgtaaggtgatgactaacccccctcacgcataggaccagacatctagagcatgata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24088716 |
actacgctttaaagctaaacgaatttattcttacaacaccggcttgtaaggtgatgactaacccccctcatgcataggaccagacatctagagcatgata |
24088815 |
T |
|
| Q |
201 |
cgagtggcc |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
24088816 |
cgagtggcc |
24088824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 21 - 209
Target Start/End: Original strand, 24092958 - 24093146
Alignment:
| Q |
21 |
tagctatctggatctattctcgcaaaactgacatacaaatagataattggcttcatcaacatacatacattgcctgcaaaactacgctttaaagctaaac |
120 |
Q |
| |
|
||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
24092958 |
tagctattcggatctattcttacaaaactggcctacaaatagataattggcttcatcaacatacatacataacatgcaaaactacactttaaagctaaac |
24093057 |
T |
|
| Q |
121 |
gaatttattcttacaacaccggcttgtaaggtgatgactaacccccctcacgcataggaccagacatctagagcatgatacgagtggcc |
209 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
24093058 |
gaatctattcttacaacactggcttgtaaggtgatgactaaccccccttacgcataggaccagatatctagagcatgatccgagtggcc |
24093146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 24088262 - 24088380
Alignment:
| Q |
21 |
tagctatctggatctattctcgcaaaactgacatacaaatagataattggcttcatcaacatacatacattgcctgcaaaactacgctttaaagctaaac |
120 |
Q |
| |
|
||||||| ||||||||||| ||||||| | | ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
24088262 |
tagctatacggatctattcttgcaaaaccggcctacaaatagataattggcttcatcaacatacatacattgtgtgcaaaactacgcgttaaagctaaac |
24088361 |
T |
|
| Q |
121 |
gaatttattcttacaacac |
139 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
24088362 |
gaatatattcttacaacac |
24088380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 24092412 - 24092529
Alignment:
| Q |
21 |
tagctatctggatctattctcgcaaaactgacatacaaatagataattggcttcatcaacatacatacattgcctgcaaaactacgctttaaagctaaac |
120 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||| | ||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
24092412 |
tagctatacggatctattcttgcaaaaccgacctacaaatagataattggcttcatcaatacacatagattgcgtgcaaaactacgatttaaagctaaac |
24092511 |
T |
|
| Q |
121 |
gaatttattcttacaaca |
138 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
24092512 |
gaatctattcttacaaca |
24092529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 24092594 - 24092714
Alignment:
| Q |
21 |
tagctatctggatctattctcgcaaaactgacatacaaatagataattggcttcatcaacatacatacattgcctgcaaaactacgctttaaagctaaac |
120 |
Q |
| |
|
||||||| ||||||||||| |||||| ||| ||||||||||||||||||||||| || | ||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
24092594 |
tagctatacggatctattcttacaaaaccgacctacaaatagataattggcttcattaatacacatagattgcgtgcaaaactacgatttaaagctaaac |
24092693 |
T |
|
| Q |
121 |
gaatttattcttacaacaccg |
141 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
24092694 |
gaatctattcttacaacaccg |
24092714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 24092776 - 24092896
Alignment:
| Q |
21 |
tagctatctggatctattctcgcaaaactgacatacaaatagataattggcttcatcaacatacatacattgcctgcaaaactacgctttaaagctaaac |
120 |
Q |
| |
|
||||||| ||||||||| | |||||| ||| |||||||||||||||||||||||||| | ||||||||||| |||||||||||| |||||| |||||| |
|
|
| T |
24092776 |
tagctatacggatctatttttacaaaaccgacctacaaatagataattggcttcatcaatacacatacattgcgtgcaaaactacgatttaaaactaaac |
24092875 |
T |
|
| Q |
121 |
gaatttattcttacaacaccg |
141 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
24092876 |
gaatctattcttacaacaccg |
24092896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 24088116 - 24088205
Alignment:
| Q |
57 |
aaatagataattggcttcatcaacatacatacattgcctgcaaaactacgctttaaagctaaacgaatttattcttacaacaccggcttg |
146 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| | |||||||||| |
|
|
| T |
24088116 |
aaatagacaattggcttcatcaacatacatacattgcatgcaaaactacgctttaaagctaaacgaatcttttcttaaaccaccggcttg |
24088205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 24092266 - 24092342
Alignment:
| Q |
57 |
aaatagataattggcttcatcaacatacatacattgcctgcaaaactacgctttaaagctaaacgaatttattctta |
133 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
24092266 |
aaatagacaattggcttcatcaacatacatacattgcatgcaaaactacgctttaaagctaaacgaatcttttctta |
24092342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University