View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11144_low_5 (Length: 541)
Name: NF11144_low_5
Description: NF11144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11144_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 13 - 523
Target Start/End: Original strand, 46237986 - 46238496
Alignment:
| Q |
13 |
atgaataatttagatggacggagggctgttcaaatatatagttaattatgtttagtggatggatagtaaatataacaatatgttgcagatcattaaacat |
112 |
Q |
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| T |
46237986 |
atgaataatttagatggtcggagggctgttcaaatatatagtaaattatgtttagtggatggatagtaaatataacaatatgttggagatcattaaacat |
46238085 |
T |
|
| Q |
113 |
ccattcaacaccatgaaccacgacttaaatgtcattaaccacgtttggaccaagcgtaaattgaagttgcctccagcaccccggtcgcagtccaacaaat |
212 |
Q |
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| T |
46238086 |
ccattcaacaccatgaaccacgacttaaatgtcattaaccacgtttggaccaagcgtaaattgaagttgcctccagcaccccggtcgcagtccaacaaat |
46238185 |
T |
|
| Q |
213 |
gtttgggccaaacctagggggaacattctcgctttaatgacatgtcgacttattagtaactatgagttataccttgccatagtttgagaagttcgtcgcc |
312 |
Q |
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| T |
46238186 |
gtttgggccaaacctagggggaacattctcgctttaatgacatgtcgacgtattagtaactatgagttataccttgccatagtttgagaagttcgtcgcc |
46238285 |
T |
|
| Q |
313 |
agtatatgctcaatattagcaggatctgaagtgtacacttcacttctattgaagctaagcaacctataagtttttcgtttgcttgtgatgtcagtcgagt |
412 |
Q |
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| T |
46238286 |
agtatatgctcaatattagcaggatctgaagtgtacacttcacttctattgaagctaagcaacctataaatttttcgtttgcttgtgatgtcagtcgagt |
46238385 |
T |
|
| Q |
413 |
actcaagcagcctatgaaagttgaacagttcgtgcaagactgtgccagcaacagggtgatattttcttttcttgtcaaaatttctaatgccatggatttt |
512 |
Q |
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| T |
46238386 |
actcaagcagcctatgaaagttgaacagttcgtgcaagactgtgccagcaacagggtgatattttcttttcttgtcaaaatttctaatgccatggatttt |
46238485 |
T |
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| Q |
513 |
gatgataaaac |
523 |
Q |
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| T |
46238486 |
gatgataaaac |
46238496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 56 - 523
Target Start/End: Complemental strand, 46165158 - 46164690
Alignment:
| Q |
56 |
aattatgtttagtggatggatagtaaatataacaatatgttgcagatcattaaacatccattcaacaccatgaaccacgactta-aatgtcattaaccac |
154 |
Q |
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||||||||||||| ||| |||||||||||||||||||||| ||| ||||||| |||||| ||||||| ||||||||| |||| |||||||||| |||| |
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| T |
46165158 |
aattatgtttagtagatcgatagtaaatataacaatatgtcgcaattcattaaccatccaatcaacacaatgaaccacaactttgaatgtcatta-ccac |
46165060 |
T |
|
| Q |
155 |
gtttggaccaagcgtaaattgaagttg-cctccagcaccccggtcgcagtccaacaaatgtttgggccaaacctagggggaacattctcgctttaatgac |
253 |
Q |
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|| ||||||||| | |||| |||||| || || ||| | |||| | ||||||||| ||||||||||||||||||||||||||||| ||| | |||| |
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| T |
46165059 |
gtctggaccaagtgcaaatggaagttttccccccgcattctagtcggaatccaacaaaagtttgggccaaacctagggggaacattctatcttaagtgac |
46164960 |
T |
|
| Q |
254 |
atgtcgacttattagtaactatgagttataccttgccatagtttgagaagttcgtcgccagtatatgctcaatattagcaggatctgaagtgtacacttc |
353 |
Q |
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|| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46164959 |
atatcgatttattagtaactacgagttataccttgccatagtttgagaagttcgtcgccatcatatgctcaatattagcaggatctgaagtgtacacttc |
46164860 |
T |
|
| Q |
354 |
acttctattgaagctaagcaacctataagtttttcgtttgcttgtgatgtcagtcgagtactcaagcagcctatgaaagttgaacagttcgtgcaagact |
453 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46164859 |
acttctattaaagctaagcaacctataagtttttcttttgcttgtgaggtcagtcatgtactcaagcagcctatgaaagttgaacagttgatgcaagact |
46164760 |
T |
|
| Q |
454 |
gtgccagcaacagggtgatattttcttttcttgtcaaaatttctaatgccatggattttgatgataaaac |
523 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
46164759 |
gtgccagcaacagggtgatatcttcttttcttgtcaaaaaatctactgccatggattttgatgataaaac |
46164690 |
T |
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