View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11144_low_8 (Length: 456)
Name: NF11144_low_8
Description: NF11144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11144_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Original strand, 54963407 - 54963808
Alignment:
| Q |
15 |
cacagagtagtgataaatgaagaaaaggaaaggctcacagtagcaatgttctgtatcccagattctgaacaagagattaaaccagtcgacaaattagtgg |
114 |
Q |
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| T |
54963407 |
cacagagtagtgataaatgaagaaaaggaaaggctcacagtagcaatgttctgcatcccagattctgaacaagagattaaaccagtcgacaaattagtgg |
54963506 |
T |
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| Q |
115 |
acgggacaaagccaatattatacagaccagtgaaaaactatgttgatttatattttcagtattaccagcagggaaaaaggccaattgaagcttccaaaat |
214 |
Q |
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| T |
54963507 |
acgggacaaagccaatattatacagaccagtgaaaaactatgttgatttatattttcagtattaccagcagggaaaaaggccaattgaagcttccaaaat |
54963606 |
T |
|
| Q |
215 |
ttaatcatagttatgtacaagacttctcggaactttgtgaaatggaagagaatgagaatgaaaatgaaataaaatgtgtattgtgaaaattctgagctgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54963607 |
ttaatcatagttatgtacaagacttctcggaactttgtgaaatggaagagaatgagaatgaaaatgaaataaaatgtgtattgtgaaaattctgagctgt |
54963706 |
T |
|
| Q |
315 |
ggctgatactttagataaaataaatgtttatttgtataatagtttaattaaaagccaaaatcataaatcctttaaaggaacatgataataattaagatcc |
414 |
Q |
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| T |
54963707 |
ggctgatactttagataaaataaatgtttatttgtataatagtttaattaaaagccaaaatcataaatcctttaaaggaacatgataataattaagatcc |
54963806 |
T |
|
| Q |
415 |
ca |
416 |
Q |
| |
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|| |
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| T |
54963807 |
ca |
54963808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 222
Target Start/End: Original strand, 54966383 - 54966550
Alignment:
| Q |
55 |
tagcaatgttctgtatcccagattctgaacaagagattaaaccagtcgacaaattagtggacgggacaaagccaatattatacagaccagtgaaaaacta |
154 |
Q |
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|||| ||||||||| ||||||||| || |||||||||||||||| |||||||||||| || | ||| ||| | ||| |||||||| | |||| || |
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| T |
54966383 |
tagctatgttctgtgtcccagattaagagaaagagattaaaccagttgacaaattagtgagcgagtcaaggcctaagttacacagaccaataaaaagtta |
54966482 |
T |
|
| Q |
155 |
tgttgatttatattttcagtattaccagcagggaaaaaggccaattgaagcttccaaaatttaatcat |
222 |
Q |
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| T |
54966483 |
tgttgaaatatattttcaatattaccagcaaggaaaaagggcaattgaagcttccaaaatttaatcat |
54966550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 31320481 - 31320275
Alignment:
| Q |
15 |
cacagagtagtgataaatgaagaaaaggaaaggctcacagtagcaatgttctgtatcccagattctgaacaagagattaaaccagtcgacaaattagtgg |
114 |
Q |
| |
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|||||||||||| |||||| ||||| |||||||||| |||| || ||||| || |||| |||| || |||||||| |||| | |||||| ||||| |
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| T |
31320481 |
cacagagtagtggtaaatgcagaaagggaaaggctctcagttgctatgttttgccgcccaaattcagagaaagagattcaaccgattgacaaactagtga |
31320382 |
T |
|
| Q |
115 |
acgggacaaagccaatattatacagaccagtgaaaaactatgttgatttatattttcagtattaccagcagggaaaaaggccaattgaagcttccaaaat |
214 |
Q |
| |
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||| | ||| |||| ||||||||| |||||| ||| | |||| | | ||| | | |||| ||||| || ||||||||||||||||| |||| |||||| |
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| T |
31320381 |
acgagtcaaggccagtattatacaaaccagtaaaagattatgctaagatatttctcgagtactaccaacaaggaaaaaggccaattgatgctttcaaaat |
31320282 |
T |
|
| Q |
215 |
ttaatca |
221 |
Q |
| |
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|||||| |
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|
| T |
31320281 |
ctaatca |
31320275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 31326517 - 31326387
Alignment:
| Q |
15 |
cacagagtagtgataaatgaagaaaaggaaaggctcacagtagcaatgttctgtatcccagattctgaacaagagattaaaccagtcgacaaattagtgg |
114 |
Q |
| |
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||||||| |||| ||||||||||||||| ||||||| ||||||| ||||| || ||||||||| || |||||||| |||| | |||||| ||||| |
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| T |
31326517 |
cacagagcagtggtaaatgaagaaaaggcaaggctctcagtagctatgttatgccgcccagattcggagaaagagattcaaccgattgacaaactagtga |
31326418 |
T |
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| Q |
115 |
acgggacaaagccaatattatacagaccagt |
145 |
Q |
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||| | ||| |||| ||| |||||||||||| |
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| T |
31326417 |
acgagtcaaggccattatcatacagaccagt |
31326387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 31320244 - 31320200
Alignment:
| Q |
268 |
gagaatgaaaatgaaataaaatgtgtattgtgaaaattctgagct |
312 |
Q |
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| T |
31320244 |
gagaatgaaaacgaaataaaatgtgtgttgtgaatattctaagct |
31320200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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