View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11145_high_1 (Length: 442)
Name: NF11145_high_1
Description: NF11145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11145_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 62 - 429
Target Start/End: Complemental strand, 54937398 - 54937026
Alignment:
| Q |
62 |
tattgcgttggccaacagtccaacacacctcttttgtaaaatcccccactc---------attttgttttggagtagtatgcgtatatatgcaaattacg |
152 |
Q |
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| T |
54937398 |
tattgcgttggccaacagtccaacacacctcttttgtaaaatcccccactatacaccctaattttgttttg---tagtatgcgtatatatgcaaattaca |
54937302 |
T |
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| Q |
153 |
aaatgaacttgaattttgacaaagttatatcctttttaatttctaataatgagccnnnnnnnnnnnnnnncaattatttgcaattgtctagtcaagtggg |
252 |
Q |
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| T |
54937301 |
aaatggacttgaattttgacaaagttatatcctttttaatttctaataatgagccaaaaaaaatgaaaaacaattttttgcaattgtctagtcaagtggg |
54937202 |
T |
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| Q |
253 |
ttctccatgaaaaggacctctgtccccctgtagaagaaaagattcagataagaagtggcttctttccactgctttaaatgcctttgtctttggccatcct |
352 |
Q |
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| T |
54937201 |
ttctccatgaaaaggacctctgttcccctgtagaagaaaagattcagataagaagtggcttctttctactgctttaaatgcctttgtctttggctatcct |
54937102 |
T |
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| Q |
353 |
ccatgaaagtgaacnnnnnnnnaccggaaaataagtggcttcttttctttttccccctgctttaaacatttgtcttc |
429 |
Q |
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| T |
54937101 |
ccatgaaagtgaacttttttttaccggaaaataagtggcttcttttc-ttttccccctgctttaaacatttgtcttc |
54937026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 54937470 - 54937423
Alignment:
| Q |
19 |
atctgccaagacaaaaaa-ttaaacagtcaccggcatctttcattatt |
65 |
Q |
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| T |
54937470 |
atctgccaagacaaaaaaattaaacagtcaccggcatctttcattatt |
54937423 |
T |
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