View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11145_high_6 (Length: 296)
Name: NF11145_high_6
Description: NF11145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11145_high_6 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 34974781 - 34974504
Alignment:
| Q |
19 |
taaataccctctctttgtaccaaaataaaataccctctcttgcattagaattcattgcaacacaaatagtcacttgtgtatattaaagagaaaacaaata |
118 |
Q |
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| T |
34974781 |
taaataccctctctttgtaccaaaataaaataccctctcttgcattagaattcattgcaacacaaatagtcacttgtgtatattaaagagaaaacaaata |
34974682 |
T |
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| Q |
119 |
tgcatatcttaaattcttttttgaaaaagttgcaacacctttgtagcacatcacttcaaagaattgcatgtcaaagcaaatcaannnnnnncttagcagc |
218 |
Q |
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| T |
34974681 |
tgcatatcttaaattcttttttgaaaaagttgcaacacctttgtagcacatcacttcaaagaattgcatgtcaaaccaaatcaatttttttcttagcagc |
34974582 |
T |
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| Q |
219 |
atgtttttgtcgcttcatcctcctaagagcaaacccgttatgggttcaaattgtatatttcacatctctttcaacttt |
296 |
Q |
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| T |
34974581 |
atgtttttgtcgcttcatcctcctaagagcaaacccattatgggttcaaattgtatatttcacatctctttcaacttt |
34974504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 213 - 296
Target Start/End: Complemental strand, 34956125 - 34956042
Alignment:
| Q |
213 |
agcagcatgtttttgtcgcttcatcctcctaagagcaaacccgttatgggttcaaattgtatatttcacatctctttcaacttt |
296 |
Q |
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| T |
34956125 |
agcagcatgtttatatcgattcatcctcctaagatcaaacccactatgtgttcaaattgtatatttcatatccatttcaacttt |
34956042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 280
Target Start/End: Complemental strand, 35035387 - 35035247
Alignment:
| Q |
140 |
tgaaaaagttgcaacacctttgtagcacatcacttcaaagaattgcatgtcaaagcaaatcaannnnnnncttagcagcatgtttttgtcgcttcatcct |
239 |
Q |
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| T |
35035387 |
tgaaaaagtttcaactcctttgtaacacttcatttcaaaaatttgcttgtctaaccaaatcattttttttcttaggaatatgtttttatcgcttcatcct |
35035288 |
T |
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| Q |
240 |
cctaagagcaaacccgttatgggttcaaattgtatatttca |
280 |
Q |
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| T |
35035287 |
cctaagagcaaatccattatgtgttcaaattctatatttca |
35035247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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