View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11145_low_12 (Length: 223)
Name: NF11145_low_12
Description: NF11145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11145_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 35789290 - 35789085
Alignment:
| Q |
15 |
aggagagaaaacaacatatcatggtctacgaaccctggatatcatcatggaactaatgagtatcagatgaatagtggaagaagaagaagaaatggaggaa |
114 |
Q |
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| T |
35789290 |
aggagagaaaacaacatatcatggtctacgaaccctggatatgatcatggaactaatgagtatcagatgaatagtggaagaagaagaagaaatggaggaa |
35789191 |
T |
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| Q |
115 |
g------------aggatggaggggaaattatccttatgtcgacaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactgcatga |
202 |
Q |
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| T |
35789190 |
gaggaggagggagaggatggaggggaaattatccttatgtcgacaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactacaaga |
35789091 |
T |
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| Q |
203 |
aagcta |
208 |
Q |
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|||||| |
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| T |
35789090 |
aagcta |
35789085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 35765952 - 35765781
Alignment:
| Q |
25 |
acaacatatcatggtctacgaaccctggatatcatcatggaactaatgagtatcagatgaatagtggaagaagaagaagaaatggaggaagaggatggag |
124 |
Q |
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| T |
35765952 |
acaacatgtcatggtctaagaaccctggatatcatcatggcactagtgactatcagatgaatagaggaagaggaagagg---tggaggaa------ggag |
35765862 |
T |
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| Q |
125 |
gggaaattatccttatgtcgacaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactgcatgaaag |
205 |
Q |
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| T |
35765861 |
gggaaattttgcttatgcagacaaggtaactactcctagtgcatggtaaatgaagatcagatgctttggactgcaagaaag |
35765781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 35798913 - 35798817
Alignment:
| Q |
20 |
agaaaacaacatatcatggtctacgaaccctggatatcatcatggaactaatgagtatcagatgaatagtggaagaagaagaagaaatggaggaagagga |
119 |
Q |
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| T |
35798913 |
agaaaacaacatgtcttggtctaagaaccctggatatcatcatggcactaatgagtatcagatgaatagaggaagaaga---agaaatggaggaagagga |
35798817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 109 - 201
Target Start/End: Complemental strand, 35760373 - 35760281
Alignment:
| Q |
109 |
gaggaagaggatggaggggaaattatccttatgtcgacaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactgcatg |
201 |
Q |
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| T |
35760373 |
gaggaggaggaaggaggggaaatttttcttatgtggaaaaggtagctactcctggtgcatggtaaatgaagatcaagggccttggactgcatg |
35760281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 35755330 - 35755244
Alignment:
| Q |
15 |
aggagagaaaacaacatatcatggtctacgaaccctggatatcatcatggaactaatgagtatcagatgaatagtggaagaagaaga |
101 |
Q |
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| T |
35755330 |
aggagagaaaacaacatgtcatggtctaagagccctgaaaatcattatggcaataatgagtatcagatgaatagaggaagaggaaga |
35755244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 35760470 - 35760394
Alignment:
| Q |
27 |
aacatatcatggtctacgaaccctggatatcatcatggaactaatgagtatcagatgaatagtggaagaagaagaag |
103 |
Q |
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| T |
35760470 |
aacatgtcgtggtctaataaccccggacattatcatggtactaatgaatatcagatgaatagaggaagaagaagaag |
35760394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 35785347 - 35785293
Alignment:
| Q |
145 |
acaaggtagctactccttgtgcatggtgaatgaatatcaaatgccttggactgca |
199 |
Q |
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| T |
35785347 |
acaaggtagctactcctactgcatggtaaatgaagatcaaataccttgtactgca |
35785293 |
T |
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