View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11145_low_7 (Length: 294)
Name: NF11145_low_7
Description: NF11145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11145_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 37516822 - 37517084
Alignment:
| Q |
17 |
acatatattactcccagtgcatactggaaatgtatcagttatcaactataatcagcattttgttaataataatatatctttgaaagtaatcataggttta |
116 |
Q |
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| T |
37516822 |
acatatattactcccagtgcatactggaaatgtatcagttatcaactataatcagcattttgttaataatgatatatctttgaaagtaatcataggttta |
37516921 |
T |
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| Q |
117 |
aaccatatcaagcatagttgaagtggtcataccatgtcatgaaccaattccttccaaaagcttaagccatgctgaagacatgtgactggttctatatatc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37516922 |
aaccatatcaagcatagttgaagtggtcataccatgtcatgaaccaattccttccaaaagcttaagccatgctgaagacatgtgaatggttctatatatc |
37517021 |
T |
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| Q |
217 |
tagcacaccactagaggaagaaatactttcacatttagtatatattttagaacttaactctgcct |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37517022 |
tagcacaccactagaggaagaaatactttcacatttag--tatattttagaacttaactctgcct |
37517084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 14843010 - 14843254
Alignment:
| Q |
17 |
acatatattactcccagtgcatactggaaatgtatcagttatcaactataatcagcattttgttaataataatatatctttgaaagtaatcataggttta |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14843010 |
acatatattactcccagtgcatactggaaatgtatcagttatcaactataatcagcatt------------------ctttgaaagtaatcataggttta |
14843091 |
T |
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| Q |
117 |
aaccatatcaagcatagttgaagtggtcataccatgtcatgaaccaattccttccaaaagcttaagccatgctgaagacatgtgactggttctatatatc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14843092 |
aaccatatcaagcatagttgaagtggtcataccatgtcatgaaccaattccttccaaaagcttaagccatgctgaagacatgtgaatggttctatatatc |
14843191 |
T |
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| Q |
217 |
tagcacaccactagaggaagaaatactttcacatttagtatatattttagaacttaactctgcct |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
14843192 |
tagcacaccactagaggaagaaatactttcacatttag--tatatttgagaacttaactctgcct |
14843254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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