View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11145_low_8 (Length: 290)

Name: NF11145_low_8
Description: NF11145
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11145_low_8
NF11145_low_8
[»] chr6 (2 HSPs)
chr6 (4-276)||(11390699-11390971)
chr6 (4-276)||(11419653-11419925)
[»] chr3 (14 HSPs)
chr3 (41-209)||(24614659-24614827)
chr3 (41-213)||(24108840-24109012)
chr3 (44-213)||(24116550-24116719)
chr3 (41-213)||(23689756-23689928)
chr3 (41-213)||(24061993-24062165)
chr3 (41-214)||(23693213-23693386)
chr3 (41-214)||(23711653-23711826)
chr3 (41-214)||(23730109-23730282)
chr3 (41-214)||(23748564-23748737)
chr3 (221-272)||(23693140-23693191)
chr3 (221-272)||(23711580-23711631)
chr3 (221-272)||(23730036-23730087)
chr3 (221-272)||(23748491-23748542)
chr3 (221-276)||(24116742-24116797)


Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 4 - 276
Target Start/End: Complemental strand, 11390971 - 11390699
Alignment:
Q  4 acacgatcttaactccttctccgagtatccggttccggtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatac 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11390971 acacgatcttaactccttctccgagtatccggttccggtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatac 11390872  T
Q  104 acagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatct 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11390871 acagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatct 11390772  T
Q  204 tgtcttcatccttaatatttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttg 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11390771 tgtcttcatccttaatatttctaacaaggaacacataaggtgttgtaactgttaaattccaatccagtttttg 11390699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 4 - 276
Target Start/End: Original strand, 11419653 - 11419925
Alignment:
Q  4 acacgatcttaactccttctccgagtatccggttccggtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatac 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419653 acacgatcttaactccttctccgagtatccggttccggtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatac 11419752  T
Q  104 acagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatct 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419753 acagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatct 11419852  T
Q  204 tgtcttcatccttaatatttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttg 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11419853 tgtcttcatccttaatatttctaacaaggaacacataaggtgttgtaactgttaaattccaatccagtttttg 11419925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 41 - 209
Target Start/End: Complemental strand, 24614827 - 24614659
Alignment:
Q  41 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 140  Q
    ||||| ||||||||||||||| |||| || ||||||||||||| |||||  |||||||||||||| | | ||||||||||||| ||||| |||||||| |    
T  24614827 gtacacatcttcaaatcattgctccaaaagggataccttccaacaacaaaccttgcacaatacacggaacaagcagcaatcattgaaggcttatagtcgc 24614728  T
Q  141 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtctt 209  Q
    ||||||| || | || ||||||||||||||| || |||||||||||||| || ||||| ||||||||||    
T  24614727 acacaatggattgatttgtcaagctcagctcagagaagaaaaacaccatgttctccatgatcttgtctt 24614659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 41 - 213
Target Start/End: Original strand, 24108840 - 24109012
Alignment:
Q  41 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 140  Q
    ||||| ||||||||||||||| |||| || ||||||||| ||| |||||  |||||||||||||| | | ||||||||||||| ||||| |||||||| |    
T  24108840 gtacacatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcattgaaggcttatagtcgc 24108939  T
Q  141 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatc 213  Q
    ||||||| |||| || ||||||||| || || ||||||||||||||||| || ||||| ||||| ||||||||    
T  24108940 acacaatagaatgatttgtcaagctgagttcagaaaagaaaaacaccatcttctccatgatcttatcttcatc 24109012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 213
Target Start/End: Original strand, 24116550 - 24116719
Alignment:
Q  44 catatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacaca 143  Q
    |||||||||||||||||| |||| || ||||||||| ||| |||||  |||||||||||||| | | ||||||||||||  ||||| || ||||| ||||    
T  24116550 catatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcaca 24116649  T
Q  144 caattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatc 213  Q
    |||| |||| || ||||||||| |  || |||||||||||||||||||| ||||| ||||||||||||||    
T  24116650 caatagaatgatttgtcaagctgacttccgaaaagaaaaacaccatattctccatgatcttgtcttcatc 24116719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 41 - 213
Target Start/End: Complemental strand, 23689928 - 23689756
Alignment:
Q  41 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 140  Q
    ||||| ||||||||||||||| |||| || ||||||||| ||| |||||  |||||||||||||| | | ||||||||||||  ||||| || ||||| |    
T  23689928 gtacacatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgc 23689829  T
Q  141 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatc 213  Q
    | ||||| |||| || ||||||||| || || ||||||||||||||||| || ||||| ||||||||||||||    
T  23689828 agacaatggaatgatttgtcaagctgagttccgaaaagaaaaacaccatgttctccatgatcttgtcttcatc 23689756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 41 - 213
Target Start/End: Complemental strand, 24062165 - 24061993
Alignment:
Q  41 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 140  Q
    ||||| ||||||||||||||| |||| || ||||||||| ||| |||||  |||||||||||||| | | ||||||||||||  ||||| || ||||| |    
T  24062165 gtacacatcttcaaatcattgctccaaaagggatacctttcaacaacaaaccttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgc 24062066  T
Q  141 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatc 213  Q
    | ||||| |||| || ||||||||| || || ||||||||||||||||| || ||||| ||||||||||||||    
T  24062065 agacaatggaatgatttgtcaagctgagttccgaaaagaaaaacaccatgttctccatgatcttgtcttcatc 24061993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 214
Target Start/End: Complemental strand, 23693386 - 23693213
Alignment:
Q  41 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 140  Q
    ||||| || |||||||||||| |||| || ||||||||||||| || ||  ||||||  |||||| ||| ||||||||||||||||||| || ||||| |    
T  23693386 gtacacattttcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgc 23693287  T
Q  141 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatcc 214  Q
    ||||||| |||| || ||| ||||| || || ||||||||||||||||| |  ||||| |||||||||||||||    
T  23693286 acacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatgatcttgtcttcatcc 23693213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 214
Target Start/End: Complemental strand, 23711826 - 23711653
Alignment:
Q  41 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 140  Q
    ||||| || |||||||||||| |||| || ||||||||||||| || ||  ||||||  |||||| ||| ||||||||||||||||||| || ||||| |    
T  23711826 gtacacattttcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgc 23711727  T
Q  141 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatcc 214  Q
    ||||||| |||| || ||| ||||| || || ||||||||||||||||| |  ||||| |||||||||||||||    
T  23711726 acacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatgatcttgtcttcatcc 23711653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 214
Target Start/End: Complemental strand, 23730282 - 23730109
Alignment:
Q  41 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 140  Q
    ||||| || |||||||||||| |||| || ||||||||||||| || ||  ||||||  |||||| ||| ||||||||||||||||||| || ||||| |    
T  23730282 gtacacattttcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgc 23730183  T
Q  141 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatcc 214  Q
    ||||||| |||| || ||| ||||| || || ||||||||||||||||| |  ||||| |||||||||||||||    
T  23730182 acacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatgatcttgtcttcatcc 23730109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 214
Target Start/End: Complemental strand, 23748737 - 23748564
Alignment:
Q  41 gtacatatcttcaaatcattgttccataaaggataccttccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcac 140  Q
    ||||| || |||||||||||| |||| || ||||||||||||| || ||  ||||||  |||||| ||| ||||||||||||||||||| || ||||| |    
T  23748737 gtacacattttcaaatcattgctccaaaagggataccttccaacaataaaccttgcaagatacacggcacaagcagcaatcatagaaggcttgtagtcgc 23748638  T
Q  141 acacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatcatcttgtcttcatcc 214  Q
    ||||||| |||| || ||| ||||| || || ||||||||||||||||| |  ||||| |||||||||||||||    
T  23748637 acacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatgatcttgtcttcatcc 23748564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 23693191 - 23693140
Alignment:
Q  221 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtt 272  Q
    ||||||||||| || ||||||||||||| |||||||||| ||||| ||||||    
T  23693191 tttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagtt 23693140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 23711631 - 23711580
Alignment:
Q  221 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtt 272  Q
    ||||||||||| || ||||||||||||| |||||||||| ||||| ||||||    
T  23711631 tttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagtt 23711580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 23730087 - 23730036
Alignment:
Q  221 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtt 272  Q
    ||||||||||| || ||||||||||||| |||||||||| ||||| ||||||    
T  23730087 tttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagtt 23730036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 272
Target Start/End: Complemental strand, 23748542 - 23748491
Alignment:
Q  221 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtt 272  Q
    ||||||||||| || ||||||||||||| |||||||||| ||||| ||||||    
T  23748542 tttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagtt 23748491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 24116742 - 24116797
Alignment:
Q  221 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttg 276  Q
    ||||||||||| || ||||||||||||| ||| |||||| ||||| ||||||||||    
T  24116742 tttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagtttttg 24116797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University