View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11146_high_3 (Length: 381)
Name: NF11146_high_3
Description: NF11146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11146_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 4761680 - 4761328
Alignment:
| Q |
1 |
aatgaaactttacatttatagggccatgatcaaatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgttg |
100 |
Q |
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| T |
4761680 |
aatgaaactttacatttatagggccatgatcaaatgtttcttgtacctcaatttaattttaataggactgaaaagaaccattgtgttatgaatgatgttg |
4761581 |
T |
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| Q |
101 |
tcttgtcttgtggtaacgatttcaattgcgtgtatgaatatgtccttttcatagaacaattgggtataaacgcaaccttaattataatgtaattattaat |
200 |
Q |
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| T |
4761580 |
tcttgtcttgtggtaacgatttcaattgcgtgtatgaat--gtccttttcattgaacaattgggtataaacgcaaccttaattataatgtaattattaat |
4761483 |
T |
|
| Q |
201 |
tattatggtttaccaacaaaccccgcctattgatattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattgttaacaaa |
300 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4761482 |
tattatggtttaccaataaaccctgcctattgatattttctgttacgtaaatggtgagattaacatattgtaacaaacattaacaaaaattgttaacaaa |
4761383 |
T |
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| Q |
301 |
tctatgcatggtaagatataataagaaaaatggttctggttccacttagtcatga |
355 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4761382 |
tctatgcatggtaagatataataagaaaaatgattctggttccacttagtcatga |
4761328 |
T |
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