View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11146_low_1 (Length: 464)
Name: NF11146_low_1
Description: NF11146
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11146_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 39824872 - 39825304
Alignment:
| Q |
1 |
catttgtataatcaatccatactttcatatataatatgattaatctttctaataaattaatatggcttgtttatatgttgtagtcattctatattggagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
39824872 |
catttgtataatcaatccatactttcatatataatatgattaatctttctaataaattaatatagcttgtttatatgttgtagtctttctatattggagg |
39824971 |
T |
|
| Q |
101 |
tggagccccactgtcagtactttccggattcgagcctcgaatccttgaatctgcatttaatgtaaggaaactaacaaacaacttcactatgtgtctgtgt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39824972 |
tggagccccactgtcagtaccttccggattcgagcctcgaatccttgaatctgcatttaatgtaaggaaactaacaaacaacttcactatgtgtctgtgt |
39825071 |
T |
|
| Q |
201 |
tgtgttcgatgtccttgtttctatcagtgtttcatagctagcaaacatactaatgtgttaaataattaactcatcataggtatcaggatcaaagttgatg |
300 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39825072 |
tgtgttcgatgtccttgtctctatcagcgtttcatagctagcaaacatactaatgtgttaaataattaattcatcataggtatcaggatcaaagttgatg |
39825171 |
T |
|
| Q |
301 |
aaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacatatggacaaaattccttcaactaaaagagg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39825172 |
aaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacatatggacaaaattccttcaactaaaagagg |
39825271 |
T |
|
| Q |
401 |
atgacaaactaaaccacatgatgaaaatgatgc |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
39825272 |
atgacaaactaaaccacatgatgaaaatgatgc |
39825304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 39804835 - 39805267
Alignment:
| Q |
1 |
catttgtataatcaatccatactttcatatataatatgattaatctttctaataaattaatatggcttgtttatatgttgtagtcattctatattggagg |
100 |
Q |
| |
|
||||||||||||||||| |||| || |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
39804835 |
catttgtataatcaatcaatacctttatatataatacgatcaatctttctaataaattaatatggcttgtttatatgttgtagtctttctatattggagg |
39804934 |
T |
|
| Q |
101 |
tggagccccactgtcagtactttccggattcgagcctcgaatccttgaatctgcatttaatgtaaggaaactaacaaacaacttcactatgtgtctgtgt |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |
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|
| T |
39804935 |
tggagccccactgtcggtactttccggattcgagcctcgaatccttgaatctgcatttaatgtaaggaaactaacaaacaacttcactacgtgtcggcat |
39805034 |
T |
|
| Q |
201 |
tgtgttcgatgtccttgtttctatcagtgtttcatagctagcaaacatactaatgtgttaaataattaactcatcataggtatcaggatcaaagttgatg |
300 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||||||| |||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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|
| T |
39805035 |
tgtgttcgatgtccttgtctctgtcagcgtttcattgctagcaaacttactaatgtgttaaatgattaactcatcacaggtatcaggatcaaagttgatg |
39805134 |
T |
|
| Q |
301 |
aaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacatatggacaaaattccttcaactaaaagagg |
400 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| |
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|
| T |
39805135 |
aaattcttcacaaggaaaaatgagggtccaattgtacatgtgggccgttcacatgcaagttcttcaagcatatggacaaaattccttcaactaaaagagg |
39805234 |
T |
|
| Q |
401 |
atgacaaactaaaccacatgatgaaaatgatgc |
433 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| |
|
|
| T |
39805235 |
atgagaaactaaaccacatgaagaaaatgatgc |
39805267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 39813363 - 39813795
Alignment:
| Q |
1 |
catttgtataatcaatccatactttcatatataatatgattaatctttctaataaattaatatggcttgtttatatgttgtagtcattctatattggagg |
100 |
Q |
| |
|
||||||||||||||||| |||| || |||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39813363 |
catttgtataatcaatcaatacctttatatataatacgattaatctttcgaatgaattaatatggcttgtttatatgttgtagtctttctatattggagg |
39813462 |
T |
|
| Q |
101 |
tggagccccactgtcagtactttccggattcgagcctcgaatccttgaatctgcatttaatgtaaggaaactaacaaacaacttcactatgtgtctgtgt |
200 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||| |
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|
| T |
39813463 |
aggagctccagtgtcggtactttccggattcgagcctcgaatccttgaatctgcatttaatgtaaggaaactaacaaacaattttactatgtgtcagtgc |
39813562 |
T |
|
| Q |
201 |
tgtgttcgatgtccttgtttctatcagtgtttcatagctagcaaacatactaatgtgttaaataattaactcatcataggtatcaggatcaaagttgatg |
300 |
Q |
| |
|
||||||||||| ||| ||| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| | |
|
|
| T |
39813563 |
cgtgttcgatgtttatgtctctcttagtgtttcataactagcaaacgtactaatgtgttaaataattaactcatcacaggtatcaggatcagagttgaag |
39813662 |
T |
|
| Q |
301 |
aaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacatatggacaaaattccttcaactaaaagagg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
39813663 |
aaattcttcacaaggaaacatgagggtccaattgtacatgtgggccattcacatgcaagtgcttcaagcatatggactaaattccttcaactaaaagagg |
39813762 |
T |
|
| Q |
401 |
atgacaaactaaaccacatgatgaaaatgatgc |
433 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
39813763 |
atgacaaactaaaccacatgaagaaaatgatgc |
39813795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 60 - 433
Target Start/End: Original strand, 39921198 - 39921572
Alignment:
| Q |
60 |
atatggcttgtttatatgtt-gtagtcattctatattggaggtggagccccactgtcagtactttccggattcgagcctcgaatccttgaatctgcattt |
158 |
Q |
| |
|
|||||| ||||||||||||| |||||| |||||||||||||| ||||| ||| |||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39921198 |
atatggtttgtttatatgtttgtagtctttctatattggaggaggagctccagtgtcggtattttccggattcgagcctcgaatccttgaatctgcattt |
39921297 |
T |
|
| Q |
159 |
aatgtaaggaaactaacaaacaacttcactatgtgtctgtgttgtgttcgatgtccttgtttctatcagtgtttcatagctagcaaacatactaatgtgt |
258 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| | || ||||||||||| || ||| ||||| |||||||| ||| |||| |||||||||| |
|
|
| T |
39921298 |
aatgtaaggaaacaaacaaacaacttcactatgtgtcggcgtcgtgttcgatgtttgtgcctctgtcagtatttcatagatagaaaactgactaatgtgt |
39921397 |
T |
|
| Q |
259 |
taaataattaactcatcataggtatcaggatcaaagttgatgaaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaa |
358 |
Q |
| |
|
| ||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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|
| T |
39921398 |
ttaataattaactcatcccaggtatcaggatcagagttgagtaaattcttcacaaggaaacatgagggtccaattgtacatgtgggccgttcacatgcaa |
39921497 |
T |
|
| Q |
359 |
gtgcttcaaacatatggacaaaattccttcaactaaaagaggatgacaaactaaaccacatgatgaaaatgatgc |
433 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| |||||||||| || |||||| ||||||||| ||||||||||| |
|
|
| T |
39921498 |
gtgcttcaagcatatggactaaattccttcaattaaaagaggaagagaaactacaccacatgaagaaaatgatgc |
39921572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 78 - 431
Target Start/End: Original strand, 39909898 - 39910251
Alignment:
| Q |
78 |
ttgtagtcattctatattggaggtggagccccactgtcagtactttccggattcgagcctcgaatccttgaatctgcatttaatgtaaggaaactaacaa |
177 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| |||| ||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39909898 |
ttgtagtcattctatattggaggaggagctccagtgtcggtattttccggattcgagcctcaaatccttgaatccgcatttaatgtaaggaaactaacaa |
39909997 |
T |
|
| Q |
178 |
acaacttcactatgtgtctgtgttgtgttcgatgtccttgtttctatcagtgtttcatagctagcaaacatactaatgtgttaaataattaactcatcat |
277 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||||| || ||| ||||| |||||||| ||| |||| |||||| |||| |||||||||||||||| |
|
|
| T |
39909998 |
acaacttcactatgtgtcggtgttgagtttgatgtctgtgcctctgtcagtatttcatagatagaaaactgactaatatgtttaataattaactcatcac |
39910097 |
T |
|
| Q |
278 |
aggtatcaggatcaaagttgatgaaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacatatggac |
377 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
39910098 |
aggtatcaggatcagagttgagtaaattcttcacaaggaaacatgagggtccaattgtacacgtgggccattcacatgcaagtgcttcaagcatatggac |
39910197 |
T |
|
| Q |
378 |
aaaattccttcaactaaaagaggatgacaaactaaaccacatgatgaaaatgat |
431 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | | ||||||| ||||||||| |
|
|
| T |
39910198 |
taaattccttcaactaaaagaggatgagaaattgcatcacatgaagaaaatgat |
39910251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 78 - 404
Target Start/End: Original strand, 39882529 - 39882861
Alignment:
| Q |
78 |
ttgtagtcattctatattggaggtggagccccactgtcagtactttccggattcgagcctcgaatccttgaatctgcatttaatgtaaggaaactaacaa |
177 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||| | |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39882529 |
ttgtagtctttctatattggaggaggagctccattatcagtactttccggattcgagcatcgaatccttgaatcggcatttaatgtaaggaaactaacaa |
39882628 |
T |
|
| Q |
178 |
ac----aacttcactatgtgtctgtgttgtgttcgatgtccttgtttctatcagtgtttcatagctagcaaacatactaa--tgtgttaaataattaact |
271 |
Q |
| |
|
|| |||||||||| ||||||| |||||||||||||| ||| ||| ||||| |||||||| ||| |||| | || |||||| ||||||| ||| |
|
|
| T |
39882629 |
acaattaacttcactacgtgtctgcgttgtgttcgatgtttgtgtctctgtcagtatttcatagatagaaaactgatcaatgtgtgtttaataatttact |
39882728 |
T |
|
| Q |
272 |
catcataggtatcaggatcaaagttgatgaaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacat |
371 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
39882729 |
catcataggtatcaggatcagagttgatgaaattcttcacaaggaaaaatgagggtccaattgtacacgtgggcccttcacatgcaagtgcttcaagcat |
39882828 |
T |
|
| Q |
372 |
atggacaaaattccttcaactaaaagaggatga |
404 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |
|
|
| T |
39882829 |
atggactaaattccttcaactgaaagaggatga |
39882861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 278 - 433
Target Start/End: Original strand, 39926705 - 39926860
Alignment:
| Q |
278 |
aggtatcaggatcaaagttgatgaaattcttcacaaggaaacatgagggtccaattgtacacgtgggccgttcacatccaagtgcttcaaacatatggac |
377 |
Q |
| |
|
|||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
39926705 |
aggtatcaggatcagagttgaagaaattattcacaaggaaacatgagggtccaattgtacacatgggccattcacatgcaagtgcttcaagcatatggac |
39926804 |
T |
|
| Q |
378 |
aaaattccttcaactaaaagaggatgacaaactaaaccacatgatgaaaatgatgc |
433 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | | ||||||| ||||||||||| |
|
|
| T |
39926805 |
taaattccttcaactaaaagaggatgagaaattgcatcacatgaagaaaatgatgc |
39926860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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