View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11147_high_1 (Length: 696)
Name: NF11147_high_1
Description: NF11147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11147_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 18 - 678
Target Start/End: Complemental strand, 42239376 - 42238716
Alignment:
| Q |
18 |
catcatgtgtgcaaatatttacacctaacaaaagaaatgttaataacacaaatattaagaaattggaccttttgataatggaatttgatgaaattgatca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42239376 |
catcatgtgtgcaaatatttacacctaacaaaagaaatgttaataacacaaatattaagaaattggaccttttgataatggaatttgatgaaattgatcg |
42239277 |
T |
|
| Q |
118 |
tcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgaca |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42239276 |
tgatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgaca |
42239177 |
T |
|
| Q |
218 |
ctaacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtgctgcaaaagaagataagcgacggccgtac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42239176 |
ctaacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtgctgcaaaagaagataagcgacggccttac |
42239077 |
T |
|
| Q |
318 |
gctcttcgttgcttaaaaacttgcgtccattatttgttccttcatattcaaatgcatattgtataattactcctaacaaatgataacacaaatttgaatc |
417 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42239076 |
gctcttcattgcttaaaaatttgcgtccattatttgttccttcatattcaaatgcatattgtataattactcctaacaaatgataacacaaatttgaatc |
42238977 |
T |
|
| Q |
418 |
aaattgaataaagaagaaatacattaccatcagaattaagtactccttcaagttcactctcatcaactggttgaacattttcttcaaagtcaaactctat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42238976 |
aaattgaataaagaagaaatacattaccatcagaattaagtactccttcaagttcactctcatcaactggttgaacattttcttcaaagtcaaactctat |
42238877 |
T |
|
| Q |
518 |
atctgaaatgttggtgtcatcaacttcttgtggttggtcttcatcaaacataacaatctctatttcctcttcactttctgccacatattgggtataatgt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42238876 |
atctgaaatgttggtgtcatcaacttcttgtggttggtcttcgtcaaacataacaatctctatttcctcttcactttcttccacatattgggtataatgt |
42238777 |
T |
|
| Q |
618 |
tcctgaattgtttgtggtatcaacctctatttcatgactttgagtttcatggtgtcattca |
678 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
42238776 |
tcctgaattgtttgtggtatcaacctctgtttcatgactttgagtttcatggtgtaattca |
42238716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 32 - 604
Target Start/End: Complemental strand, 17649959 - 17649385
Alignment:
| Q |
32 |
atatttacacctaacaaaagaaatgttaataacacaaatattaagaaa---ttggacctttt-gataatggaatttgatgaaattgatcatcatcaaaat |
127 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| |||||||||| |||| |||||||||||| ||| | | |
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|
| T |
17649959 |
atatttacacctaacaaaataaatgttaataacacaaatattaaaaaaaaattggacctttttgataatggaacttgacgaaattgatcatgatccag-t |
17649861 |
T |
|
| Q |
128 |
tgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagaga |
227 |
Q |
| |
|
| |||||||||||||||| || |||||||||| |||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17649860 |
tcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcctg---tgagtttttctctcttccaaatacgtttaatgacactaacagaga |
17649764 |
T |
|
| Q |
228 |
ccgaatacattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtgctgcaaaagaagataagcgacggccgtacgctcttcgtt |
327 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||| || | ||| | |||||||||||||||||| ||| |||||| ||| ||||||||| |
|
|
| T |
17649763 |
ctgaatacattgacgcaatcaattttctagtcccttttttcagtcttcttgcatggctgtgctgcaaaagaagatgagcaacggccttacactcttcgtt |
17649664 |
T |
|
| Q |
328 |
gcttaaaaacttgcgtccattatttgttccttcatattcaaatgcatattgt--ataattactcctaacaaatgataacacaaatttgaatcaaattgaa |
425 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
17649663 |
gcttaaaaacttgcgtccattatctgttccttcatatttaaatgcatattgtgtataattactcctaacaaatgataacaaaaatttgaatcaaattaaa |
17649564 |
T |
|
| Q |
426 |
taaagaagaaatacattaccatcagaattaagtactccttcaagttcactctcatcaactggttgaacattttcttcaaagtcaaactctatatctgaaa |
525 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
17649563 |
taaagaagaaatacattaccatcagcattaaggactccttcaggttcactctcatcaacatgttgaacattttcttcaaagtcatactctatatctgcaa |
17649464 |
T |
|
| Q |
526 |
tgttggtgtcatcaacttcttgtggttggtcttcatcaaacataacaatctctatttcctcttcactttctgccacata |
604 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17649463 |
tgttggtgtcataaacttcttgtggttggtcttcatcaaacataacaatctctatttcctcttcactttcttccacata |
17649385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 79 - 604
Target Start/End: Complemental strand, 1328710 - 1328186
Alignment:
| Q |
79 |
attggacctttt-gataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcc |
177 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||||||||||| ||| | || |||||||||||||||| || |||||||||| |||||||||||||||| |
|
|
| T |
1328710 |
attggacctttttgataatggaacttgaagaaattgatcatgatccag-ttcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcc |
1328612 |
T |
|
| Q |
178 |
tgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatcct |
277 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
1328611 |
tg---tgagttttgctctcttccaaatacgtttaatgacactaacagagactgaatacattgacgcaatcaattttctagtcccttttttcagtcttcct |
1328515 |
T |
|
| Q |
278 |
tcatagttgtgctgcaaaagaagataagcgacggccgtacgctcttcgttgcttaaaaacttgcgtccattatttgttccttcatattcaaatgcatatt |
377 |
Q |
| |
|
||| |||||||||||||||||||| ||| | |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
1328514 |
acatggttgtgctgcaaaagaagatgagcaatggccttacgctcttcgttgcttaaaaacttgcgtccattatctgttccttcatattgaaatgcatatt |
1328415 |
T |
|
| Q |
378 |
gtat--aattactcctaacaaatgataacacaaatttgaatcaaattgaataaagaagaaatacattaccatcagaattaagtactccttcaagttcact |
475 |
Q |
| |
|
|| | |||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
1328414 |
gtgtgtaattactcctaacaaatgataacaaaaatttgaatgaaattaaataaagaagaaatacattaccatcagcattaaggactccttcaggttcact |
1328315 |
T |
|
| Q |
476 |
ctcatcaactggttgaacattttcttcaaagtcaaactctatatctgaaatgttggtgtcatcaacttcttgtggttggtcttcatcaaacataacaatc |
575 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1328314 |
ctcattaacatgttgaacattatcttcaaagtcatactctatatctgcaatgttggtgtcataaacttcttgtggttggtcttcatcaaacataacaatc |
1328215 |
T |
|
| Q |
576 |
tctatttcctcttcactttctgccacata |
604 |
Q |
| |
|
|||||||||| |||||||||| ||||||| |
|
|
| T |
1328214 |
tctatttcctattcactttcttccacata |
1328186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 79 - 604
Target Start/End: Original strand, 42540845 - 42541369
Alignment:
| Q |
79 |
attggacctttt-gataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcc |
177 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||||||||||| ||| | || |||||||||||||||| || |||||||||| |||||||||||||||| |
|
|
| T |
42540845 |
attggacctttttgataatggaacttgaagaaattgatcatgatccag-ttcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcc |
42540943 |
T |
|
| Q |
178 |
tgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatcct |
277 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
42540944 |
tg---tgagttttgctctcttccaaatacgtttaatgacactaacagagactgaatacattgacgcaatcaattttctagtcccttttttcagtcttcct |
42541040 |
T |
|
| Q |
278 |
tcatagttgtgctgcaaaagaagataagcgacggccgtacgctcttcgttgcttaaaaacttgcgtccattatttgttccttcatattcaaatgcatatt |
377 |
Q |
| |
|
||| | |||||||||||||||||| ||| | |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
42541041 |
gcatggctgtgctgcaaaagaagatgagcaatggccttacgctcttcgttgcttaaaaacttgcgtccattatctgttccttcatattgaaatgcatatt |
42541140 |
T |
|
| Q |
378 |
gtat--aattactcctaacaaatgataacacaaatttgaatcaaattgaataaagaagaaatacattaccatcagaattaagtactccttcaagttcact |
475 |
Q |
| |
|
|| | |||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
42541141 |
gtgtgtaattactcctaacaaatgataacaaaaatttgaatgaaattaaataaagaagaaatacattaccatcagcattaaggactccttcaggttcact |
42541240 |
T |
|
| Q |
476 |
ctcatcaactggttgaacattttcttcaaagtcaaactctatatctgaaatgttggtgtcatcaacttcttgtggttggtcttcatcaaacataacaatc |
575 |
Q |
| |
|
||||| ||| |||||||||| |||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42541241 |
ctcattaacatgttgaacattatcttcaaagtcatactctatatctgcaatgttggtgtcataaacttcttgtggttggtcttcatcaaacataacaatc |
42541340 |
T |
|
| Q |
576 |
tctatttcctcttcactttctgccacata |
604 |
Q |
| |
|
| ||||||||||||||||||| ||||||| |
|
|
| T |
42541341 |
tatatttcctcttcactttcttccacata |
42541369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 225 - 604
Target Start/End: Complemental strand, 4745952 - 4745571
Alignment:
| Q |
225 |
agaccgaatacattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtgctgcaaaagaagataagcgacggccgtacgctcttc |
324 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||||| ||| | |||| |||||||||| |
|
|
| T |
4745952 |
agactgaatacattgacgcaatcaattttctagtcccttttttcagtcttcctgcatggctgtgctgcaaaagaagatgagcaatggccttacgctcttc |
4745853 |
T |
|
| Q |
325 |
gttgcttaaaaacttgcgtccattatttgttccttcatattcaaatgcatattgt--ataattactcctaacaaatgataacacaaatttgaatcaaatt |
422 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4745852 |
gttgcttaaaaacttgcgtccattatctgttccttcatattgaaatgcatattgtgtataattactcctaacaaatgataacaaaaatttgaatcaaatt |
4745753 |
T |
|
| Q |
423 |
gaataaagaagaaatacattaccatcagaattaagtactccttcaagttcactctcatcaactggttgaacattttcttcaaagtcaaactctatatctg |
522 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4745752 |
aaataaagaagaaatacattaccatcagcattaaggactccttcaggttcactctcatcaacatgttgaacattttcttcaaagtcatactctatatctg |
4745653 |
T |
|
| Q |
523 |
aaatgttggtgtcatcaacttcttgtggttggtcttcatcaaacataacaatctctatttcctcttcactttctgccacata |
604 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4745652 |
caatgttggtgtcataaacttcttgtggttggtcttcatcaaacataacaatctctatttcctcttcactttcttccacata |
4745571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 634 - 668
Target Start/End: Complemental strand, 32059118 - 32059084
Alignment:
| Q |
634 |
gtatcaacctctatttcatgactttgagtttcatg |
668 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32059118 |
gtatcaacctctatttcatgattttgagtttcatg |
32059084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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