View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11147_high_2 (Length: 447)
Name: NF11147_high_2
Description: NF11147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11147_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 424
Target Start/End: Complemental strand, 32907451 - 32907033
Alignment:
| Q |
7 |
tctgctcgttcactgcagtttgaagtggttgcccacttctttgtctctttaactccaccacctgtctctttcaaaatccaatcaccacaaattcaactca |
106 |
Q |
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| T |
32907451 |
tctgcttgttcactgcagtttgaagtggttgcccacttctttgtctctttaactccaccacctgtctctttcaaaatccaatcaccacaaattcaattca |
32907352 |
T |
|
| Q |
107 |
aatatacatatacaaacacacttcaatttgtaagggtgttaatttaatgcctaaaatttcaaaaatagcaataattaagtccattaaattgaataaacaa |
206 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32907351 |
aatatacatatacacacacacttcaatttgtaagggtgttaatttaatgcctaaaatttcaaaaatagcaataattaagtccattaaattgaataaacaa |
32907252 |
T |
|
| Q |
207 |
caataa-nnnnnnnccctttcaaatctagcactatacttttaaagatgttaggtttatcctatgcaagaatatcatattgacttctatagttttttattg |
305 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32907251 |
caataattttttttccctttcaaatctagcactatacttttaaagatgttaggtttatcctatgcaagaatatcatattgacttctatagttttttattg |
32907152 |
T |
|
| Q |
306 |
catcagagtaaacctaaaatctctaaaaatttgnnnnnnnntgaccaaatgggctaaattgatattttagaaatttgttaaatttaccgatccttacaga |
405 |
Q |
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||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32907151 |
catcagagtaaacataaaatctctaaaatttgaaaaaaaaatgaccaaatgggctaaattgatattttagaaatttgttaaatttaccgatccttacaga |
32907052 |
T |
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| Q |
406 |
agctatttatctttttctg |
424 |
Q |
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||||||||||||||||||| |
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| T |
32907051 |
agctatttatctttttctg |
32907033 |
T |
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