View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11147_high_4 (Length: 319)
Name: NF11147_high_4
Description: NF11147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11147_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 178 - 308
Target Start/End: Complemental strand, 30932921 - 30932791
Alignment:
| Q |
178 |
agaaaagaacatttttcatatttaggatcgatggttgtgctattttgtagtaatggacaactcgaatttattagttgcaagatcagcaaggatgcaactg |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30932921 |
agaaaagaacatttttcatatttaggatcgatggttgtgctattttgtagtaatggacaactcgaatttattagttgcaagatcagcaaggatgcaactg |
30932822 |
T |
|
| Q |
278 |
cagcacaaagcagggaaacttgattgttcat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30932821 |
cagcacaaagcagggaaacttgattgttcat |
30932791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 30933087 - 30933016
Alignment:
| Q |
15 |
tacacaaacacattacacaagtaaacttgaggaactatttgatggagttattttatcaccacatattgtttc |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30933087 |
tacacaaacacattacacaagtaaacttgaggaactatttgatggagttattttatcaccacatattgtttc |
30933016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University