View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11147_high_5 (Length: 308)
Name: NF11147_high_5
Description: NF11147
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11147_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 46897336 - 46897619
Alignment:
| Q |
17 |
aaaaatgacccaagaagatgcatgattaatagtcacaagaaggaagagaatatctcaaaacaaagcacttgggtgggtggtgca----gatgaaaaccca |
112 |
Q |
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| T |
46897336 |
aaaaatgacccaagaagatgcatgattaatactcacaagaaggaagagaatatctcaaaacaaagcacttgggtgggtggtgcatgcagatgaaaaccca |
46897435 |
T |
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| Q |
113 |
cgaccagttaaaaaacttttttagcacaggtcaggtttacttacttcaaactcaacatccaaacctgtctaagagtatagtagtttcttatttaccttcc |
212 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46897436 |
cgaccagttaaaaaacttttttagcataggtcaggtttacttacttcaaactcaacatccaaacctgtctaagagtatagtagtttcttatttaccttcc |
46897535 |
T |
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| Q |
213 |
actagcggctcagtcatttaacttaaactcctcgtgaagatctaaacccatgtttgtaatgttatcgctaacttcactaacttc |
296 |
Q |
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| T |
46897536 |
actagcggctcagtcatttaatttacactcctcgtgaagatctaaacccatgtttgtaatgttatcgctaacttcactaacttc |
46897619 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 41829610 - 41829684
Alignment:
| Q |
17 |
aaaaatgacccaagaagatgcatgattaatagtcacaagaaggaagagaatatctcaaaacaaagcacttgggtgg |
92 |
Q |
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||||||||| |||||||||||| | ||| |||||| || |||||||||||||||| |||| ||||||||||||||| |
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| T |
41829610 |
aaaaatgactcaagaagatgcagggtta-tagtcagaaaaaggaagagaatatctaaaaataaagcacttgggtgg |
41829684 |
T |
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