View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11148_high_1 (Length: 661)
Name: NF11148_high_1
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 124 - 638
Target Start/End: Original strand, 47875111 - 47875631
Alignment:
| Q |
124 |
ttaaatgcatgttacacgacgtaggtgcatacaaataaaattcttatatatatgtaataatcatgtttaattaagatataatatatgcaggacaaaggtg |
223 |
Q |
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| T |
47875111 |
ttaaatgcatgttacacaacgtaggtgcatacaaataaaattcttata----tgtaataatcatgtttaattaagatataatatatgcaggacaaaggtg |
47875206 |
T |
|
| Q |
224 |
aaacaaacagaagtggactgtgaggcactgaagcattgttatgaaactctaacagaagagaacaggaggctggaagaggagttgaaagagcttaaatcca |
323 |
Q |
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| T |
47875207 |
aaacaaacagaagtggactgtgaggcactgaagcattgttatgaaactctaacagaagagaacaggaggctggaagaggagttgaaagagcttaagtcca |
47875306 |
T |
|
| Q |
324 |
tgaaaaccgtaaataattacatgcagcttccggttgccagtcttacagtttgcccttcttgtaaaagaattt------gcaccggcaccggcaccagcga |
417 |
Q |
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| T |
47875307 |
tgaaaaccgtaaataattacatgcagcttccggttgccagtcttacagcttgcccttcttgtaaaagaatttgcaccggcaccggcaccggcaccagcga |
47875406 |
T |
|
| Q |
418 |
tgagaatggctcctctcacaccacagctttgattctctgcccaaaggcccaacaaattcacttctatgcaaataataataactatacgttcacccaatct |
517 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47875407 |
tgagaatggctcctctcacaccacggctttgattctatgcccaaaggcc---caaattcacttctatgcaaataataataactatacgttcacccaatct |
47875503 |
T |
|
| Q |
518 |
tctgcaactatt----gctagctagctagggaggctagatgaatacagtttcattttcttattgatat----atacactactcgttaattggatagtaat |
609 |
Q |
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| T |
47875504 |
tctgcaactattgctagctagctagctagagaggctagatgaatacagtttcattttctta-tgatttttgcatacactactcattaattggatagtaat |
47875602 |
T |
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| Q |
610 |
atataatgtaattcatgatagccgattga |
638 |
Q |
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| T |
47875603 |
atataatgtaattcatgatagccgattga |
47875631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 47874942 - 47875045
Alignment:
| Q |
19 |
gcaagaattggcaagcaagctgaatcttgggacgagacaagtggaggtgtggtttcagaacaggagggcaaggttgtaattctatatttacaatcattat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47874942 |
gcaagaattggcaagcaagctgaatcttgggacgagacaagtggaggtgtggtttcagaacaggagggcaaggttgtaattctatatttacaatcattat |
47875041 |
T |
|
| Q |
119 |
tctc |
122 |
Q |
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|||| |
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| T |
47875042 |
tctc |
47875045 |
T |
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