View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11148_high_10 (Length: 402)

Name: NF11148_high_10
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11148_high_10
NF11148_high_10
[»] chr4 (4 HSPs)
chr4 (17-171)||(29226510-29226664)
chr4 (172-303)||(21214926-21215058)
chr4 (245-307)||(13436506-13436568)
chr4 (172-209)||(2547121-2547158)
[»] chr5 (9 HSPs)
chr5 (172-312)||(41949333-41949473)
chr5 (172-312)||(41951731-41951871)
chr5 (241-313)||(15424587-15424660)
chr5 (172-209)||(43233926-43233963)
chr5 (172-209)||(21254249-21254286)
chr5 (172-209)||(21256721-21256758)
chr5 (172-209)||(26873161-26873198)
chr5 (252-304)||(4730610-4730662)
chr5 (242-304)||(41326269-41326331)
[»] chr3 (11 HSPs)
chr3 (172-313)||(17743000-17743141)
chr3 (172-313)||(19044320-19044461)
chr3 (182-313)||(4607434-4607565)
chr3 (172-303)||(40131944-40132075)
chr3 (203-302)||(52737859-52737957)
chr3 (245-304)||(19439476-19439535)
chr3 (167-209)||(548459-548501)
chr3 (171-209)||(782837-782875)
chr3 (172-209)||(10018777-10018814)
chr3 (172-209)||(10256091-10256128)
chr3 (172-209)||(10661756-10661793)
[»] chr8 (4 HSPs)
chr8 (172-312)||(5690756-5690896)
chr8 (245-304)||(26174272-26174331)
chr8 (245-304)||(26175417-26175476)
chr8 (172-201)||(12464815-12464844)
[»] chr7 (8 HSPs)
chr7 (214-304)||(34510703-34510793)
chr7 (214-304)||(34512813-34512903)
chr7 (245-304)||(40772944-40773003)
chr7 (172-209)||(41832707-41832744)
chr7 (172-209)||(8083389-8083426)
chr7 (172-209)||(25432168-25432205)
chr7 (172-209)||(41830301-41830338)
chr7 (245-302)||(35130554-35130611)
[»] chr2 (8 HSPs)
chr2 (172-304)||(30866088-30866220)
chr2 (172-302)||(45391828-45391957)
chr2 (245-304)||(12015081-12015140)
chr2 (171-209)||(24039559-24039597)
chr2 (172-209)||(24038364-24038401)
chr2 (172-209)||(31269463-31269500)
chr2 (171-233)||(600484-600546)
chr2 (171-209)||(31180318-31180356)
[»] chr1 (6 HSPs)
chr1 (169-216)||(2427325-2427372)
chr1 (172-258)||(26231118-26231203)
chr1 (172-258)||(29849987-29850072)
chr1 (181-275)||(26231336-26231429)
chr1 (186-288)||(35270117-35270218)
chr1 (172-233)||(12436295-12436356)
[»] chr6 (8 HSPs)
chr6 (245-304)||(29427349-29427408)
chr6 (247-304)||(14618810-14618867)
chr6 (172-304)||(6825508-6825641)
chr6 (172-209)||(30689634-30689671)
chr6 (260-304)||(6823124-6823168)
chr6 (245-304)||(10774589-10774648)
chr6 (180-230)||(3064727-3064777)
chr6 (172-209)||(8655827-8655864)
[»] scaffold0959 (1 HSPs)
scaffold0959 (172-209)||(408-445)
[»] scaffold0023 (1 HSPs)
scaffold0023 (172-209)||(111544-111581)
[»] scaffold0525 (1 HSPs)
scaffold0525 (170-209)||(2026-2065)
[»] scaffold0862 (1 HSPs)
scaffold0862 (172-209)||(323-360)
[»] scaffold0655 (1 HSPs)
scaffold0655 (173-209)||(746-782)
[»] scaffold0001 (1 HSPs)
scaffold0001 (260-304)||(144750-144794)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 29226510 - 29226664
Alignment:
Q  17 atcaacatcatatccttaattatcaaagcatcaaagtccaatccgctaacttaatcatctgtcaaatcaactcatttccgaacatttcttctacattaat 116  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29226510 atcaacatcatatccttaataattaaagcatcaaagtccaatccgctaacttaatcatctgtcaaatcaactcatttccgaacatttcttctacattaat 29226609  T
Q  117 ttctctggaccaagtgaattgcaaaggagtcaaaagttcttaaagatttgaagac 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29226610 ttctctggaccaagtgaattgcaaaggagtcaaaagttcttaaagatttgaagac 29226664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 172 - 303
Target Start/End: Complemental strand, 21215058 - 21214926
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaa-tgaggaagttatccca 270  Q
    |||||| ||||||| ||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |||||||||||| |||   | ||| ||||    
T  21215058 tgttagtaaacatgacatccatggaaggaatgagagaaaagctatggaagtgttgtattgatagtaaaatatgatattacaaagtgattgaattagccca 21214959  T
Q  271 ctaataggattgttacaactatatatactacta 303  Q
    | | | || | ||||||||||||||||||||||    
T  21214958 cgactggggtggttacaactatatatactacta 21214926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 13436506 - 13436568
Alignment:
Q  245 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactacttc 307  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  13436506 atattacaaatgatgaagttatcccactaatgagattgttacaactatatatactactacttc 13436568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 2547158 - 2547121
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  2547158 tgttaggaaacatgacatccatggaaggaaggagagaa 2547121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 172 - 312
Target Start/End: Original strand, 41949333 - 41949473
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41949333 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtaatattacaaatgaggaagttatcccac 41949432  T
Q  272 taataggattgttacaactatatatactactacttctctaa 312  Q
    |||| || |||||||||||||||||||||||||||| ||||    
T  41949433 taatggggttgttacaactatatatactactacttcactaa 41949473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 172 - 312
Target Start/End: Original strand, 41951731 - 41951871
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  41951731 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgataataaaatgtaatattacaaatgaggaagttatcccac 41951830  T
Q  272 taataggattgttacaactatatatactactacttctctaa 312  Q
    |||| || |||||||||||||||||||||||||||| ||||    
T  41951831 taatggggttgttacaactatatatactactacttcactaa 41951871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 241 - 313
Target Start/End: Original strand, 15424587 - 15424660
Alignment:
Q  241 tgtgatattacaaa-tgaggaagttatcccactaataggattgttacaactatatatactactacttctctaac 313  Q
    |||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||    
T  15424587 tgtgatattacaaaatgaggaagttatcccactaatggggttgttacaactatatatactactacttcactaac 15424660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 43233963 - 43233926
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43233963 tgttaggaaacatggcatccatggaaggaatgagagaa 43233926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 21254286 - 21254249
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||||||||||||||||||||||||||| |||||||    
T  21254286 tgttaggaaacatggcatccatggaaggaaggagagaa 21254249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 21256758 - 21256721
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||||||||||||||||||||||||||| |||||||    
T  21256758 tgttaggaaacatggcatccatggaaggaaggagagaa 21256721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 26873161 - 26873198
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||||||||||||||||||||||||||| |||||||    
T  26873161 tgttaggaaacatggcatccatggaaggaaggagagaa 26873198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 4730662 - 4730610
Alignment:
Q  252 aaatgaggaagttatcccactaataggattgttacaactatatatactactac 304  Q
    |||||| |||||||||||| |||| ||||| |||||| |||||||||||||||    
T  4730662 aaatgatgaagttatcccattaatgggattattacaagtatatatactactac 4730610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 41326269 - 41326331
Alignment:
Q  242 gtgatattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 304  Q
    |||||||||||||||||  | | | ||||||||| |||| |||||||| ||||||||||||||    
T  41326269 gtgatattacaaatgagtgaatcaacccactaatgggatggttacaaccatatatactactac 41326331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 172 - 313
Target Start/End: Complemental strand, 17743141 - 17743000
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 271  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17743141 tgttaggaaacatggcatccatgaaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 17743042  T
Q  272 taataggattgttacaactatatatactactacttctctaac 313  Q
    ||||  |||||||||||||||||||||||||| ||| |||||    
T  17743041 taatgagattgttacaactatatatactactatttcactaac 17743000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 172 - 313
Target Start/End: Complemental strand, 19044461 - 19044320
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 271  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19044461 tgttaggaaacatggcatccatgaaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 19044362  T
Q  272 taataggattgttacaactatatatactactacttctctaac 313  Q
    ||||  |||||||||||||||||||||||||| ||| |||||    
T  19044361 taatgagattgttacaactatatatactactatttcactaac 19044320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 182 - 313
Target Start/End: Complemental strand, 4607565 - 4607434
Alignment:
Q  182 catggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccactaataggatt 281  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  4607565 catggtatccatggaaggaatgagagaattactatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccactaatggggtt 4607466  T
Q  282 gttacaactatatatactactacttctctaac 313  Q
    |||||||||||||||||||||||||| |||||    
T  4607465 gttacaactatatatactactacttcactaac 4607434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 303
Target Start/End: Complemental strand, 40132075 - 40131944
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa-tagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgag-gaagttatccc 269  Q
    ||||| |||| |||||||| |||||||||||||||||| ||| |   |  || |||||||||||  |||||   |||||||||||||| |||  ||||||    
T  40132075 tgttatgaaatatggcatctatggaaggaatgagagaaatagatcaaagttttttgtattgata--aaaattgaatattacaaatgagtgaaagtatccc 40131978  T
Q  270 actaataggattgttacaactatatatactacta 303  Q
    ||||||||| |  |||||||||||||||||||||    
T  40131977 actaatagggtgattacaactatatatactacta 40131944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 203 - 302
Target Start/End: Original strand, 52737859 - 52737957
Alignment:
Q  203 gagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaa-tgaggaagttatcccactaataggattgttacaactatatatactac 301  Q
    ||||||| |||||||||| |  |||||||||| |||   ||||||||||||| ||||  ||||| ||||||||| || | ||||||||||||||||||||    
T  52737859 gagagaaaagctatgaaact--tgtattgatattaatgagtgatattacaaaatgagtgagttaacccactaatggggtggttacaactatatatactac 52737956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 19439535 - 19439476
Alignment:
Q  245 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 304  Q
    |||||||| |||| ||||||||||||||||| ||  | |||||| |||||||||||||||    
T  19439535 atattacagatgatgaagttatcccactaatgggggtattacaagtatatatactactac 19439476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 548501 - 548459
Alignment:
Q  167 aagactgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||| |||||| |||| ||||||||||||||||||||||||||    
T  548501 aagaatgttagaaaacttggcatccatggaaggaatgagagaa 548459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 782837 - 782875
Alignment:
Q  171 ctgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  782837 ctgttaggaaacatgacatccatggaaggaaggagagaa 782875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 10018777 - 10018814
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  10018777 tgttaggaaacatggcatccatggaaagaaggagagaa 10018814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 10256091 - 10256128
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  10256091 tgttaggaaacatggcatccatggaaagaaggagagaa 10256128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 10661756 - 10661793
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  10661756 tgttaggaaacatgacatccatggaaagaatgagagaa 10661793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 172 - 312
Target Start/End: Complemental strand, 5690896 - 5690756
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 271  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5690896 tgttatgaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtaatattacaaatgaggaagttatcccac 5690797  T
Q  272 taataggattgttacaactatatatactactacttctctaa 312  Q
    | || || |||||||||||||||||||||||||||| ||||    
T  5690796 tcatggggttgttacaactatatatactactacttcactaa 5690756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 26174331 - 26174272
Alignment:
Q  245 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 304  Q
    ||||||||||||| |||||||||||||||||  | || |||||| |||||||||||||||    
T  26174331 atattacaaatgatgaagttatcccactaatgaggttattacaagtatatatactactac 26174272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 26175476 - 26175417
Alignment:
Q  245 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 304  Q
    ||||||||||||| ||||||||||||||||  || || |||||| |||||||||||||||    
T  26175476 atattacaaatgatgaagttatcccactaaaggggttattacaattatatatactactac 26175417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 12464844 - 12464815
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaa 201  Q
    ||||||||||||||||||||||||||||||    
T  12464844 tgttaggaaacatggcatccatggaaggaa 12464815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 34510793 - 34510703
Alignment:
Q  214 tatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 304  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||    
T  34510793 tatgaaattgttctattgatagtaaaatgtaatattacaaatgaggaagttatcccactaatggggttattacaagtatatatactactac 34510703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 34512903 - 34512813
Alignment:
Q  214 tatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 304  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||    
T  34512903 tatgaaattgttctattgatagtaaaatgtaatattacaaatgaggaagttatcccactaatggggttattacaagtatatatactactac 34512813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 40772944 - 40773003
Alignment:
Q  245 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 304  Q
    ||||||||||||| ||||||||||||||||| ||||| |||||| |||||||||||||||    
T  40772944 atattacaaatgatgaagttatcccactaatgggattattacaagtatatatactactac 40773003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 41832744 - 41832707
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41832744 tgttaggaaacatggcatccatggaaggaatgagagaa 41832707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 8083389 - 8083426
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||||||||||||||||||||||||||| |||||||    
T  8083389 tgttaggaaacatggcatccatggaaggaaggagagaa 8083426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 25432205 - 25432168
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  25432205 tgttatgaaacatggcatccatggaaggaatgagagaa 25432168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 41830338 - 41830301
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||||||||||| |||||||||||||||||||||||    
T  41830338 tgttaggaaacatgtcatccatggaaggaatgagagaa 41830301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 35130611 - 35130554
Alignment:
Q  245 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactact 302  Q
    ||||||||||||||  | ||| ||||||||| || | |||||||||||||||||||||    
T  35130611 atattacaaatgagtgaattaacccactaatggggtggttacaactatatatactact 35130554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 172 - 304
Target Start/End: Complemental strand, 30866220 - 30866088
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaatagct-atgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatccca 270  Q
    ||||||||||||||  ||||| ||| | || ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||| || |||| |||    
T  30866220 tgttaggaaacatgatatccaaggatg-aaggagagaaaagcttatgaaattgttctattgatagtaaaatgtgatattacaaatgagaaaattattcca 30866122  T
Q  271 ctaataggattgttacaactatatatactactac 304  Q
    ||||| || || |||||| |||||||||||||||    
T  30866121 ctaatggggttattacaagtatatatactactac 30866088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 302
Target Start/End: Original strand, 45391828 - 45391957
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccac 271  Q
    ||||| ||||||||||||||||||| | || ||||||| | |||||||| | |||||||||| |||||   | |||||||||||||   | ||  |||||    
T  45391828 tgttatgaaacatggcatccatggatg-aaggagagaaaaactatgaaaatattgtattgatggtaaagaataatattacaaatgattgaattgacccac 45391926  T
Q  272 taataggattgttacaactatatatactact 302  Q
    |||| || | |||||||||||||||||||||    
T  45391927 taatggggtggttacaactatatatactact 45391957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 12015140 - 12015081
Alignment:
Q  245 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 304  Q
    ||||||||||||| ||||||||||||||||| || || |||||| |||||||| ||||||    
T  12015140 atattacaaatgatgaagttatcccactaatggggttattacaagtatatatattactac 12015081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 24039597 - 24039559
Alignment:
Q  171 ctgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  24039597 ctgttagaaaacatggcatccatggaaggaatgagagaa 24039559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 24038401 - 24038364
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||| |||||||||||||||||||||||||||||||    
T  24038401 tgttagaaaacatggcatccatggaaggaatgagagaa 24038364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 31269463 - 31269500
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||||||||||||||||||||||||||| |||||||    
T  31269463 tgttaggaaacatggcatccatggaaggaaggagagaa 31269500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 600484 - 600546
Alignment:
Q  171 ctgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgat 233  Q
    ||||||||||||||| |||||||| |||||| ||||||| || ||||||| | || |||||||    
T  600484 ctgttaggaaacatgacatccatgaaaggaaagagagaaaagttatgaaagtattttattgat 600546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 209
Target Start/End: Complemental strand, 31180356 - 31180318
Alignment:
Q  171 ctgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  31180356 ctgttaggaagcatggcatccatggaaggaaggagagaa 31180318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 2427372 - 2427325
Alignment:
Q  169 gactgttaggaaacatggcatccatggaaggaatgagagaatagctat 216  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2427372 gactgttaggaaacatggcatccatggaaggaatgagagaaaagctat 2427325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 26231118 - 26231203
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgag 258  Q
    ||||| ||||||||||||||||||| | || ||||||| || ||| ||| | ||||||| |||||||||||||||||||||||||||    
T  26231118 tgttatgaaacatggcatccatggatg-aaggagagaaaaggtattaaactattgtattcatagtaaaatgtgatattacaaatgag 26231203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 29849987 - 29850072
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgag 258  Q
    ||||| ||||||||||||||||||| | || | ||||| | |||||||| | ||||||||||||||||| |||||||||||||||||    
T  29849987 tgttatgaaacatggcatccatggatg-aaggggagaaaaactatgaaactattgtattgatagtaaaaagtgatattacaaatgag 29850072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 26231336 - 26231429
Alignment:
Q  181 acatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccactaat 275  Q
    |||||||||||||||| | || ||||||| || |||||||   ||||||||||||||||  |||||||||||||||||  | || ||||||||||    
T  26231336 acatggcatccatggatg-aaggagagaaaagttatgaaacaattgtattgatagtaaagagtgatattacaaatgagtgaattgtcccactaat 26231429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 288
Target Start/End: Original strand, 35270117 - 35270218
Alignment:
Q  186 gcatccatggaaggaatgagagaatagctatgaaattgttgtattgatagtaaaatgtgatattacaaatgaggaagttatcccactaataggattgtta 285  Q
    ||||||||||||| || ||||| | ||||| |||| | |||||||||||  |||  |||| ||||||||||| ||||||  |||||||||||| ||||||    
T  35270117 gcatccatggaagaaaagagaggaaagctacgaaactattgtattgatacgaaagagtgaaattacaaatgaagaagtt-gcccactaataggtttgtta 35270215  T
Q  286 caa 288  Q
    |||    
T  35270216 caa 35270218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 12436356 - 12436295
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaattgttgtattgat 233  Q
    ||||| || ||||| |||||||| |||||||||||||| |||||||||| | ||||||||||    
T  12436356 tgttatgagacatgtcatccatgaaaggaatgagagaaaagctatgaaactattgtattgat 12436295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 304
Target Start/End: Complemental strand, 29427408 - 29427349
Alignment:
Q  245 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 304  Q
    ||||||||||||| ||||||||||||||||| || || |||||| |||||||||||||||    
T  29427408 atattacaaatgatgaagttatcccactaatggggttattacaagtatatatactactac 29427349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 14618810 - 14618867
Alignment:
Q  247 attacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 304  Q
    ||||||||||| ||||||||||||||||| || || |||||| |||||||||||||||    
T  14618810 attacaaatgatgaagttatcccactaatggggttattacaagtatatatactactac 14618867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 304
Target Start/End: Original strand, 6825508 - 6825641
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaatagctatgaaa-ttgttgtattgatagtaaaatgtgatattac-aaatgag--gaagttatc 267  Q
    |||||||||||||||||||||||||||||| |||| || | |||  ||| |  ||||||||||||  |||||  ||||||| |||||||   ||||||||    
T  6825508 tgttaggaaacatggcatccatggaaggaaggagataa-atctaacaaactctttgtattgatag--aaatggaatattacaaaatgagaaaaagttatc 6825604  T
Q  268 ccactaataggattgttacaactatatatactactac 304  Q
    |||||||| || || |||||| |||||||||||||||    
T  6825605 ccactaatggggttattacaagtatatatactactac 6825641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 30689634 - 30689671
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  30689634 tgttaggaaacatggcatccatgaaaggaatgagagaa 30689671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 6823124 - 6823168
Alignment:
Q  260 aagttatcccactaataggattgttacaactatatatactactac 304  Q
    ||||||||||||||||||| || |||||| |||||||||||||||    
T  6823124 aagttatcccactaatagggttattacaagtatatatactactac 6823168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 10774589 - 10774648
Alignment:
Q  245 atattacaaatgaggaagttatcccactaataggattgttacaactatatatactactac 304  Q
    ||||||||||||| |||||||||||||||||  | || |||||| |||||||| ||||||    
T  10774589 atattacaaatgatgaagttatcccactaatgaggttattacaagtatatatattactac 10774648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 3064727 - 3064777
Alignment:
Q  180 aacatggcatccatggaaggaatgagagaatagctatgaaattgttgtatt 230  Q
    ||||||||||||||| |||||||||||||| || ||||||| | |||||||    
T  3064727 aacatggcatccatgaaaggaatgagagaaaagttatgaaagtattgtatt 3064777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 8655827 - 8655864
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  8655827 tgttaggaaacatggcatccatagaaggaaggagagaa 8655864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 408 - 445
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||||||||| |||||||||||||||||||||||||    
T  408 tgttaggaaacaaggcatccatggaaggaatgagagaa 445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 111544 - 111581
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||||||||||||||||||||||||||| |||||||    
T  111544 tgttaggaaacatggcatccatggaaggaaggagagaa 111581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 2026 - 2065
Alignment:
Q  170 actgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  2026 actgttgggaaacatggcatccatggaaggaaggagagaa 2065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 360 - 323
Alignment:
Q  172 tgttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  360 tgttaggaaacatggcatccatgaaaggaaggagagaa 323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 782 - 746
Alignment:
Q  173 gttaggaaacatggcatccatggaaggaatgagagaa 209  Q
    ||||||||||||||||||| | |||||||||||||||    
T  782 gttaggaaacatggcatccgtcgaaggaatgagagaa 746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 144750 - 144794
Alignment:
Q  260 aagttatcccactaataggattgttacaactatatatactactac 304  Q
    |||||||||||||||| || || |||||| |||||||||||||||    
T  144750 aagttatcccactaatggggttattacaagtatatatactactac 144794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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