View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11148_high_18 (Length: 306)
Name: NF11148_high_18
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 38008472 - 38008185
Alignment:
| Q |
1 |
ttgggcctgagcaaattgtagagaacatgcatgcacgtacagacattttatgcaagcagagggtagagcgggaaatctgaatttgtcaaacagtctcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38008472 |
ttgggcctgagcaaattgtagagaacatgcatgcacgtacagacattttatgcaagcagagggtagagcgggaaatctgaatttgtcaaacagtctcagt |
38008373 |
T |
|
| Q |
101 |
ttgtctgagttgagtgcatctgtcacagtcacatgatcttaagatatagattgcaggccacccgcgtgtcatggtcggaacattttctccgacaaagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38008372 |
ttgtctgagttgagtgcatctgtcacagtcacatgatcttaagatatagattgcaggccacccgcgtgtcatggtcggaacattttctccgacaaagaaa |
38008273 |
T |
|
| Q |
201 |
atgtttttgcagctgccagaattgggttcagagataattgactgtacagtgtacacaagttgtcaccgcaaacaattggtggtaatga |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38008272 |
atgtttttgcagctgccagaattgggttcagagataattgactgtacagtgtacacaagttgtcaccgcaaacaattggtggtaatga |
38008185 |
T |
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