View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11148_high_2 (Length: 576)
Name: NF11148_high_2
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_high_2 |
 | |
|
| [»] scaffold0570 (1 HSPs) |
| | |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
| [»] scaffold1476 (1 HSPs) |
| | |
|
| [»] scaffold0233 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 21 - 550
Target Start/End: Original strand, 48536683 - 48537216
Alignment:
| Q |
21 |
gcagcgacaacgatcaccggatccgccaactctacagtaaacttgtgttcaactttgatattgatagtcagcgctgagccaccccctg------cagctt |
114 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48536683 |
gcagcgacaacggtcaccagatccgccaactctaccgtaaacttgtgttcaactttgatattgatagtcagcgctgagccaccccctgttcctgcagctt |
48536782 |
T |
|
| Q |
115 |
gggacgcagacattgtttggtttgtgatcnnnnnnnnnnnnnnnnagaaaaggaagcttatagcttttcattattaatcaaagaagttatacaatgaggg |
214 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48536783 |
gggacgcagacattgtttggtttatgatcttttttattttttt--agaaaaggaagcttatagcttttcattattaatcaaagaagttatacaataaggg |
48536880 |
T |
|
| Q |
215 |
atattaagatgcaattggaaactagcatgtgataatgcttccctagctaagctatgggctacactattggcttgtctcctaataaaactcacatcagagt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48536881 |
atattaagatgcaattggaaactagcatgtgataatgcttccctatctaagctatgggctacactattggcttgtctcttaataaaactcacatcagagt |
48536980 |
T |
|
| Q |
315 |
ttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaaattagagacaccatctcctttataaatgctatctgccacaatcttaga |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48536981 |
ttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaaattagagacaccatctcctttataaatgctatctgccacaatcttaga |
48537080 |
T |
|
| Q |
415 |
gtctgtttcgaagtccatgcttaccaaattaagctctttcgcccactgcattgcctgcaacagacctatggcttcacccatctctatatcgagtaaaggg |
514 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48537081 |
gtctgattcgaagtctgtgcttaccaaattaagctctttcgcccactgcattgcctacaacagacctatggcttcacccatctctatatcaagtaaaggg |
48537180 |
T |
|
| Q |
515 |
gagagaaaggttgttcggcctgcgacaaaattacct |
550 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48537181 |
gggagaaaggttgttcggcctgcgacaaaattacct |
48537216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 167 - 550
Target Start/End: Original strand, 51899386 - 51899769
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51899386 |
gaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagtgcttccctagctaaat |
51899485 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||| || ||||||||||| || || |||||||| |
|
|
| T |
51899486 |
tatgggcaacaccattggcttgtctcctaataaaactcacatcagagtttactaagtcggtcatcaacaagtgtctacaatcatgaattattgccataaa |
51899585 |
T |
|
| Q |
367 |
attagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgcccactgcatt |
466 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| || |||||||||||||| |||||| |
|
|
| T |
51899586 |
atcagagacaccatctcctttataaatgctatctgccacaatctttgagtctgtttcgaagtccatactcaccatgttcagctctttcgcccattgcatt |
51899685 |
T |
|
| Q |
467 |
gcctgcaacagacctatggcttcacccatctctatatcgagtaaaggggagagaaaggttgttcggcctgcgacaaaattacct |
550 |
Q |
| |
|
|| || | ||| | ||| |||||||||||||||| ||||||||||||||| ||||||| |||||| |||||||||||||||||| |
|
|
| T |
51899686 |
gcttgtagcagccatattgcttcacccatctctacatcgagtaaaggggatagaaaggctgttcgacctgcgacaaaattacct |
51899769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 160 - 551
Target Start/End: Original strand, 16932867 - 16933258
Alignment:
| Q |
160 |
agaaaaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttcccta |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||| || | ||||||||||||||||||||||||||||||| |
|
|
| T |
16932867 |
agaaaaggaagcttatagcttttcattattaatcaaagtagttatacaatgtggaatattaaaatatagttggaaactagcatgtgataatgcttcccta |
16932966 |
T |
|
| Q |
260 |
gctaagctatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatgg |
359 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||| ||| ||| |||| | ||| || |||||||||||||| || | |
|
|
| T |
16932967 |
gctaaactatgggcaacaccattggcttgtctcctaattaaactcacatcagagtttgttaaatcggtcatcagcaagtgtctacaatcatggataattg |
16933066 |
T |
|
| Q |
360 |
ccataaaattagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgccca |
459 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| |||||| |||| |||| |||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
16933067 |
ccataaaatcagagacaccatttcctttataaattttatctgtcacagtctttgagtctgtttcgaagtccatgcttaccatgttaagctcttttgccca |
16933166 |
T |
|
| Q |
460 |
ctgcattgcctgcaacagacctatggcttcacccatctctatatcgagtaaaggggagagaaaggttgttcggcctgcgacaaaattaccta |
551 |
Q |
| |
|
||||||||| | ||| || | ||| |||||||||||||| || || ||||||||||||| | ||| ||||| | ||||||||||||| |||| |
|
|
| T |
16933167 |
ctgcattgcttacaaaagccttatagcttcacccatctcaatgtcaagtaaaggggagatagaggctgttctggctgcgacaaaattcccta |
16933258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 160 - 380
Target Start/End: Original strand, 12723360 - 12723580
Alignment:
| Q |
160 |
agaaaaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttcccta |
259 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||| || ||||||||| ||||||||||||||||||||||| |
|
|
| T |
12723360 |
agaaaaggaagtttatagcttttcattattaatcaaagtagttatacaatatggaatattaaaatataattggaaattagcatgtgataatgcttcccta |
12723459 |
T |
|
| Q |
260 |
gctaagctatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatgg |
359 |
Q |
| |
|
||||| |||||||| |||| |||| || ||||||||| |||||||||||||||||| ||| ||| |||| ||||| || |||||||||||||| || | |
|
|
| T |
12723460 |
gctaaactatgggcaacaccattgatttatctcctaattaaactcacatcagagtttattaaatcggtcatcaacaagtgtctacaatcatggataattg |
12723559 |
T |
|
| Q |
360 |
ccataaaattagagacaccat |
380 |
Q |
| |
|
||||||||| | ||||||||| |
|
|
| T |
12723560 |
ccataaaatcatagacaccat |
12723580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 167 - 459
Target Start/End: Original strand, 30468639 - 30468931
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | |||||||| || ||||||||||| | |||||||||||||| || |||||||||||||| |
|
|
| T |
30468639 |
gaagcttatagcttttcattattaattaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagat |
30468738 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
||||||| |||||||||||||||||||||| || ||||||||||||| ||||| || ||||||| | ||| |||||||| || || |||||||| || |
|
|
| T |
30468739 |
tatgggcagcactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaaaagatgtctacaatcgtgtattatggccatgaa |
30468838 |
T |
|
| Q |
367 |
attagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgccca |
459 |
Q |
| |
|
|| ||||||||||| || ||||| || | ||| |||| | || ||||||||||| || ||||| |||| ||||| || ||||||||||| |
|
|
| T |
30468839 |
atctgagacaccatcccccttatagatattctctaccaccacttttgagtctgtttcaaaatccatatttactaaatttaggtctttcgccca |
30468931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 162 - 407
Target Start/End: Complemental strand, 25737696 - 25737448
Alignment:
| Q |
162 |
aaaaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagc |
261 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||| | |||||||| || || |||||||| ||||||||| ||||||| |||||||| |||||| |
|
|
| T |
25737696 |
aaaaagaagcttatagtttttcattattaatcaaagcatgaatacaatgtggaatgttaagatgaaattggaaattagcatgatgtaatgctttcctagc |
25737597 |
T |
|
| Q |
262 |
taagctatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatg---cctacaatcatggatgatg |
358 |
Q |
| |
|
|| ||||||||| ||| ||| || ||||||||||||||| | ||||||||||| ||||| | ||||| ||||| || |||||||| || || || |
|
|
| T |
25737596 |
taggctatgggcaacattataggtttgtctcctaataaactttacatcagagttcgctaaattaatcatcaacaattgtctactacaatcgtgaattata |
25737497 |
T |
|
| Q |
359 |
gccataaaattagagacaccatctcctttataaatgctatctgccacaa |
407 |
Q |
| |
|
|||||| |||||||||||||||| ||||| || || ||||||||||||| |
|
|
| T |
25737496 |
gccatataattagagacaccatcccctttgtagatactatctgccacaa |
25737448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 167 - 432
Target Start/End: Complemental strand, 31637760 - 31637495
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||| || || |||||||| | |||| |||||| || || ||||||| ||||||| | |
|
|
| T |
31637760 |
gaagcttatagcttttcattattgatcaaagaagaaatacaatgtggaatgttaagatgaatgtggagactagcgtggtgtagtgcttccttagctaaac |
31637661 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
|||| || |||| |||| ||||||||||||| || ||||||||||||| |||| ||| | | ||||| || |||||||||| ||| || ||||| || |
|
|
| T |
31637660 |
tatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatcggtactcaacaagtgtctacaatcattgattattgccatgaa |
31637561 |
T |
|
| Q |
367 |
attagagacaccatctcctt--tataaatgctatctgccacaatcttagagtctgtttcgaagtccat |
432 |
Q |
| |
|
|| ||||||||| |||||| ||| |||||||| ||||||| || |||||||||||||||||||| |
|
|
| T |
31637560 |
atcagagacacc--ctccttgccatatatgctatcagccacaacttttgagtctgtttcgaagtccat |
31637495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 167 - 378
Target Start/End: Original strand, 6999442 - 6999653
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||| || || |||||| | | |||| |||||| || || ||||||| ||||||| | |
|
|
| T |
6999442 |
gaagcttatagcttttcattattgatcaaagaagaaatacaatgtggaatgttaagacgaatgtggagactagcgtggtgtagtgcttccttagctaaac |
6999541 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
|||| || |||| |||| ||||||||||||| || ||||||||||||| |||| | | | | ||||| || |||||||||| ||| || ||||| || |
|
|
| T |
6999542 |
tatgagccacaccattgacttgtctcctaatgaacttcacatcagagttcactaaattggtactcaacaagtgtctacaatcattgattattgccatgaa |
6999641 |
T |
|
| Q |
367 |
attagagacacc |
378 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
6999642 |
atcagagacacc |
6999653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 25178010 - 25177952
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatg |
225 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||| || || |||||||| |
|
|
| T |
25178010 |
gaagcttatagcttttcattattgatcaaagtagaaatacaatgtggaatgttaagatg |
25177952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 167 - 550
Target Start/End: Complemental strand, 330362 - 329979
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
330362 |
gaagcttatagtttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagtgcttccctagctaaac |
330263 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||| || ||||||||||| || || |||||||| |
|
|
| T |
330262 |
tatgggcaacaccattggcttgtctcctaataaaactcacatcagagtttactaagtcggtcatcaacaagtgtctacaatcatgaattattgccataaa |
330163 |
T |
|
| Q |
367 |
attagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgcccactgcatt |
466 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| || |||| || |||||||||||||| |||||| |
|
|
| T |
330162 |
atcagagacaccatctcctttataaatgctatatgccacaatctttgagtctgtttcgaagtccatactcaccatgttcagctctttcgcccattgcatt |
330063 |
T |
|
| Q |
467 |
gcctgcaacagacctatggcttcacccatctctatatcgagtaaaggggagagaaaggttgttcggcctgcgacaaaattacct |
550 |
Q |
| |
|
|| || | ||| ||||| |||||||||||||||| ||||||||||||||| ||||||| |||||| |||||||||||||||||| |
|
|
| T |
330062 |
gcttgtagcagccctattgcttcacccatctctacatcgagtaaaggggatagaaaggctgttcgacctgcgacaaaattacct |
329979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 167 - 432
Target Start/End: Original strand, 13997160 - 13997425
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||| || || |||||||| | |||| |||||| || || ||||||| ||||||| | |
|
|
| T |
13997160 |
gaagcttatagcttttcattattgatcaaagaataaatacaatgtggaatgttaagatgaatgtggagactagcgtggtgtagtgcttccttagctaaac |
13997259 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
|||| || |||| |||| ||||||||||||| || | ||||||||||| |||| ||| | | ||||| || |||||||||| ||| || |||||||| |
|
|
| T |
13997260 |
tatgagcaacaccattgacttgtctcctaatgaacttaacatcagagttcactaaatcggtactcaacaagtgtctacaatcattgattattgccataaa |
13997359 |
T |
|
| Q |
367 |
attagagacaccatctcctt--tataaatgctatctgccacaatcttagagtctgtttcgaagtccat |
432 |
Q |
| |
|
|| ||||||||| |||||| ||| ||| |||| ||||||| || |||||||||||||||||||| |
|
|
| T |
13997360 |
atcagagacacc--ctccttgccatatatgttatcagccacaacttttgagtctgtttcgaagtccat |
13997425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 6816241 - 6816301
Alignment:
| Q |
163 |
aaaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaaga |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||| |
|
|
| T |
6816241 |
aaaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaaga |
6816301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 407
Target Start/End: Original strand, 34701261 - 34701438
Alignment:
| Q |
229 |
ttggaaactagcatgtgataatgcttccctagctaagctatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatc |
328 |
Q |
| |
|
||||||||||||||| || |||| |||||||||| |||||||| | ||||||| |||||| ||||| || ||| ||||||||| |||| || ||| |
|
|
| T |
34701261 |
ttggaaactagcatgatttagtgct-ccctagctaaactatgggcggctctattggtttgtcttctaatgaacttcaaatcagagttcactaaatcaatc |
34701359 |
T |
|
| Q |
329 |
attaacaaatgcctacaatcatggatgatggccataaaattagagacaccatctcctttataaatgctatctgccacaa |
407 |
Q |
| |
|
| ||||| || ||||||||| | || || |||||||||| | | |||| || ||||| || || ||||||||||||| |
|
|
| T |
34701360 |
gtcaacaagtgtctacaatcacgaattatagccataaaatcaaaaacactgtcccctttgtagatactatctgccacaa |
34701438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 164 - 550
Target Start/End: Complemental strand, 48207684 - 48207298
Alignment:
| Q |
164 |
aaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagcta |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
48207684 |
aaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagtgcttccctagcta |
48207585 |
T |
|
| Q |
264 |
agctatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccat |
363 |
Q |
| |
|
| |||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| || || || ||||||||||| || || ||||| |
|
|
| T |
48207584 |
aactatgggcaacaccattggcttgtctcctaataaaactcacatcagagtttactaagtcggtcatcaaaaagtgtctacaatcatgaattattgccat |
48207485 |
T |
|
| Q |
364 |
aaaattagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgcccactgc |
463 |
Q |
| |
|
||||| |||| |||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| ||||||||||||||||||||| |
|
|
| T |
48207484 |
aaaatcagagtcaccatttcctttataaatgctatctgccacaatctttgagtctgtttcgaaatccatgctcaccatgttaagctctttcgcccactgc |
48207385 |
T |
|
| Q |
464 |
attgcctgcaacagacctatggcttcacccatctctatatcgagtaaaggggagagaaaggttgttcggcctgcgacaaaattacct |
550 |
Q |
| |
|
||||| || | ||| ||||| || ||||| ||||||| ||||||||||||||| | ||||| |||||| |||||||||||||||||| |
|
|
| T |
48207384 |
attgcttgtagcagccctattgcctcacctatctctacatcgagtaaaggggatataaaggctgttcgacctgcgacaaaattacct |
48207298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 167 - 459
Target Start/End: Complemental strand, 5045653 - 5045367
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | |||||||| || ||||||||||| | |||||||||||||| || |||||||||||||| |
|
|
| T |
5045653 |
gaagcttataacttttcattattaatcaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagat |
5045554 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||| || ||||| || ||||||| | ||| |||||||| || || |||||||| || |
|
|
| T |
5045553 |
tatgggcaacactattggcttgtctcctaataaacttcaca------ttcgctaaatcagtcattaatagatgtctacaatcgtgtattatggccatgaa |
5045460 |
T |
|
| Q |
367 |
attagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgccca |
459 |
Q |
| |
|
|| ||||||||||| || ||||| || | |||||||| | || | ||| |||||||| ||||| |||| ||||| || ||||||||||| |
|
|
| T |
5045459 |
atctgagacaccatcccccttatagatattctctgccaccacttttgcgtccgtttcgaaatccatatttactaaatttaggtctttcgccca |
5045367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 163 - 543
Target Start/End: Complemental strand, 14586016 - 14585636
Alignment:
| Q |
163 |
aaaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagct |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14586016 |
aaaggaagcttatagcttttcattattaatcaaactagttatacaatgtggaatattaagatataattggaaactagcatgtgataatgcttccctagct |
14585917 |
T |
|
| Q |
263 |
aagctatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggcca |
362 |
Q |
| |
|
|| |||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| || |||||||||| || || |||| |
|
|
| T |
14585916 |
aaactatgggcaacaccattggcttgtctcctaataaaattcacatcagagtttgctaagtcggtcatcaacaagtgtttacaatcatgaataattgcca |
14585817 |
T |
|
| Q |
363 |
taaaattagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgcccactg |
462 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
14585816 |
taaaatcagagacaccatctccttcataaatgctatctgtcacaatcttagagtctgtttcgaagtccatgcttaccatgttaagctcttttgcccactg |
14585717 |
T |
|
| Q |
463 |
cattgcctgcaacagacctatggcttcacccatctctatatcgagtaaaggggagagaaaggttgttcggcctgcgacaaa |
543 |
Q |
| |
|
|||||| |||| || ||||| |||||||||||||| | || ||||||||||||| | ||||||||| | |||||||||| |
|
|
| T |
14585716 |
cattgcttgcagaagccctatagcttcacccatctcaacgtcaagtaaaggggagatagaggttgttctggctgcgacaaa |
14585636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 170 - 550
Target Start/End: Original strand, 33737458 - 33737838
Alignment:
| Q |
170 |
gcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagctat |
269 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
33737458 |
gcttatagcctttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagcgcttccctagctaaactat |
33737557 |
T |
|
| Q |
270 |
gggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaaatt |
369 |
Q |
| |
|
|||| |||| |||||||||||||||||| |||||||||||||||||| |||| ||| |||| ||||| || |||||||| || || || |||||||||| |
|
|
| T |
33737558 |
gggcaacaccattggcttgtctcctaatgaaactcacatcagagtttactaaatcggtcatcaacaagtgtctacaatcttgaattattgccataaaatc |
33737657 |
T |
|
| Q |
370 |
agagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgcccactgcattgcc |
469 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| || |||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
33737658 |
agagacaccatttcctttataaacactatctgccacaatctttgagtctgtttcaaaatccatgctcaccatgttaagctctttcgcccactgcattgct |
33737757 |
T |
|
| Q |
470 |
tgcaacagacctatggcttcacccatctctatatcgagtaaaggggagagaaaggttgttcggcctgcgacaaaattacct |
550 |
Q |
| |
|
|| | ||| ||||| |||||||||||||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
33737758 |
tgtagcagtcctatcgcttcacccatctctacatcaagtaaaggggataaaaaggttgttcgacctgcgacaaaattacct |
33737838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 167 - 459
Target Start/End: Original strand, 45274243 - 45274535
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | |||||||| || ||||||||||| | |||||||||||||| || |||||||||||||| |
|
|
| T |
45274243 |
gaagcttatagcttttcattattaattaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagat |
45274342 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
|||| || |||||||||||||||||||||| || ||||||||||||| ||||| || ||||||| | ||| |||||||| || || |||||||| || |
|
|
| T |
45274343 |
tatgagcagcactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaaaagatgtctacaatcgtgtattatggccatgaa |
45274442 |
T |
|
| Q |
367 |
attagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgccca |
459 |
Q |
| |
|
|| ||||||||||| || ||||| || | ||| |||| | || ||||||||||| || ||||| |||| ||||| || ||||||||||| |
|
|
| T |
45274443 |
atctgagacaccatcccccttatagatattctctaccaccacttttgagtctgtttcaaaatccatatttactaaatttaggtctttcgccca |
45274535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 167 - 432
Target Start/End: Complemental strand, 35322510 - 35322245
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||| || || |||||||| | |||| |||||| || || ||||||| ||||||| | |
|
|
| T |
35322510 |
gaagcttatagcttttcattattgatcaaagaagaaatacaatgtggaatgttaagatgaatgtggagactagcgtggtgtagtgcttccttagctaaac |
35322411 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
|||| || |||| |||| ||||||||||||| || ||||||||||||| |||| ||| | | ||||| || |||||||||| ||| || ||||| || |
|
|
| T |
35322410 |
tatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatcggtactcaacaagtgtctacaatcattgattattgccatgaa |
35322311 |
T |
|
| Q |
367 |
attagagacaccatctcctt--tataaatgctatctgccacaatcttagagtctgtttcgaagtccat |
432 |
Q |
| |
|
|| ||||||||| |||||| ||| |||||||| ||||||| || |||||||||||||| ||||| |
|
|
| T |
35322310 |
atcagagacacc--ctccttgccatatatgctatcagccacaacttttgagtctgtttcgaattccat |
35322245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 253 - 330
Target Start/End: Complemental strand, 6663242 - 6663165
Alignment:
| Q |
253 |
ttccctagctaagctatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcat |
330 |
Q |
| |
|
||||||| |||| |||||||| |||||||| |||| |||||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
6663242 |
ttccctaactaaactatgggcaacactattaaattgtatcctaataaacttcacatcagagtttgctaaatcaatcat |
6663165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 3215207 - 3215179
Alignment:
| Q |
169 |
agcttatagcttttcattattaatcaaag |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3215207 |
agcttatagcttttcattattaatcaaag |
3215179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 170 - 550
Target Start/End: Original strand, 36480759 - 36481139
Alignment:
| Q |
170 |
gcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagctat |
269 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
36480759 |
gcttatagcctttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagcgcttccctagctaaactat |
36480858 |
T |
|
| Q |
270 |
gggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaaatt |
369 |
Q |
| |
|
|||| |||| |||||||||||||||||| |||||||||||||||||| |||| ||| |||| ||||| || |||||||| || || || |||||||||| |
|
|
| T |
36480859 |
gggcaacaccattggcttgtctcctaatgaaactcacatcagagtttactaaatcggtcatcaacaagtgtctacaatcttgaattattgccataaaatc |
36480958 |
T |
|
| Q |
370 |
agagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgcccactgcattgcc |
469 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| || |||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
36480959 |
agagacaccatttcctttataaacactatctgccacaatctttgagtctgtttcaaaatccatgctcaccatgttaagctctttcgcccactgcattgct |
36481058 |
T |
|
| Q |
470 |
tgcaacagacctatggcttcacccatctctatatcgagtaaaggggagagaaaggttgttcggcctgcgacaaaattacct |
550 |
Q |
| |
|
|| | ||| ||||| |||||||||||||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
36481059 |
tgtagcagtcctatcgcttcacccatctctacatcaagtaaaggggataaaaaggttgttcgacctgcgacaaaattacct |
36481139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 164 - 351
Target Start/End: Complemental strand, 48255147 - 48254960
Alignment:
| Q |
164 |
aaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagcta |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||| |||||||||| ||| |
|
|
| T |
48255147 |
aaggaagcttatagcttttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagtgcttccctaacta |
48255048 |
T |
|
| Q |
264 |
agctatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatg |
351 |
Q |
| |
|
| |||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| ||| |||| |||||||| |||| |||||| |
|
|
| T |
48255047 |
aactatgggcaacaccattggcttgtctcctaataaaactcacatcagagtttactaaatcggtcatcaacaaatgtctacgatcatg |
48254960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 167 - 459
Target Start/End: Original strand, 36220727 - 36221019
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||| || ||||||||||| | |||||||||||||| || |||||||||||||| |
|
|
| T |
36220727 |
gaagcttatagcttttcattattaatcaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagat |
36220826 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
||||||| | ||||||||||||||||||||| | ||||||||||||| ||||| || ||||||| | ||| |||||||| || || |||||||| || |
|
|
| T |
36220827 |
tatgggcaatactattggcttgtctcctaatggacttcacatcagagttcgctaaatcagtcattaatagatgtctacaatcgtgtattatggccatgaa |
36220926 |
T |
|
| Q |
367 |
attagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgccca |
459 |
Q |
| |
|
|| ||||||||||| || ||||| || | |||||||| | || ||||| |||||||| ||||| |||| ||||| || ||||||||||| |
|
|
| T |
36220927 |
atctgagacaccatcccccttatagatattctctgccaccacttttgagtccgtttcgaaatccatatttactaaatttaggtctttcgccca |
36221019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 167 - 432
Target Start/End: Complemental strand, 6682937 - 6682672
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||| || || |||||||| | |||| |||||| || || ||||||| ||||||| | |
|
|
| T |
6682937 |
gaagcttatagcttttcattattgatcaaagaagaaatacaatgtggaatgttaagatgaatgtggagactagcgtggtgtagtgcttccttagctaaac |
6682838 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
|||| || |||| |||| ||||||||||||| || | ||||||||||| |||| ||| | | ||||| || |||||||||| ||| || |||||||| |
|
|
| T |
6682837 |
tatgagcaacaccattgacttgtctcctaatgaactttacatcagagttcactaaatcggtactcaacaagtgtctacaatcattgattattgccataaa |
6682738 |
T |
|
| Q |
367 |
attagagacaccatctcctt--tataaatgctatctgccacaatcttagagtctgtttcgaagtccat |
432 |
Q |
| |
|
|| ||||||||| |||||| ||| |||||||| ||||||| || ||||||||||| |||||||| |
|
|
| T |
6682737 |
atcagagacacc--ctccttgccatatatgctatcagccacaacttttgagtctgtttcaaagtccat |
6682672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 180 - 456
Target Start/End: Original strand, 12701957 - 12702233
Alignment:
| Q |
180 |
tttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagctatgggctacact |
279 |
Q |
| |
|
|||||||||||||||||| | |||| |||| || |||||| |||| | |||||||||| ||| || ||||||||||| || ||| ||| | ||| |
|
|
| T |
12701957 |
tttcattattaatcaaagtatgtatagaatgtggaatattaggatgataatggaaactaggatgatttagtgcttccctagttagattataggcaaaact |
12702056 |
T |
|
| Q |
280 |
attggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaaattagagacacca |
379 |
Q |
| |
|
||||| |||||||||||| || ||||||||||||| ||||| || ||||||| | || |||||||| || || |||||||| ||||| ||||| ||| |
|
|
| T |
12702057 |
attggtttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaataggtgtctacaatcgtgtattatggccatgaaatttgagacccca |
12702156 |
T |
|
| Q |
380 |
tctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgc |
456 |
Q |
| |
|
||||| ||||| || || ||||| || | || ||||| |||||||| ||||| |||||||||| || |||||||| |
|
|
| T |
12702157 |
tctcccttatagatactttctgctaccacttttgagtccgtttcgaaatccatatttaccaaatttaggtctttcgc |
12702233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 180 - 382
Target Start/End: Complemental strand, 12904249 - 12904047
Alignment:
| Q |
180 |
tttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagctatgggctacact |
279 |
Q |
| |
|
|||||||||||||||||| | |||| |||| || ||||||||||| | |||||||||| ||| || ||||||||||| || ||| ||| ||||| |
|
|
| T |
12904249 |
tttcattattaatcaaagtatgtatagaatgtggaatattaagatgataatggaaactaggatgatttagtgcttccctagttagattataggcaacact |
12904150 |
T |
|
| Q |
280 |
attggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaaattagagacacca |
379 |
Q |
| |
|
|||||||||||||||||| || |||||| ||||| ||||| || ||||||| | || |||||||| || || |||||||| ||||| ||||||||| |
|
|
| T |
12904149 |
attggcttgtctcctaatgaacttcacatatgagttcgctaaatcagtcattaataggtgtctacaatcgtgtattatggccatgaaatttgagacacca |
12904050 |
T |
|
| Q |
380 |
tct |
382 |
Q |
| |
|
||| |
|
|
| T |
12904049 |
tct |
12904047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 254 - 378
Target Start/End: Original strand, 33037137 - 33037261
Alignment:
| Q |
254 |
tccctagctaagctatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatgga |
353 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||||||||||||||| ||||||||||||||| ||| | ||||||||| ||| ||||||| || | |
|
|
| T |
33037137 |
tccctagctaaactatgggcaacactattggtttgtctcctaataaacttcacatcagagtttgttaaattagtcattaacagatgtctacaattgtgta |
33037236 |
T |
|
| Q |
354 |
tgatggccataaaattagagacacc |
378 |
Q |
| |
|
| |||| ||| |||| ||||||||| |
|
|
| T |
33037237 |
ttatggtcatgaaatcagagacacc |
33037261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 184; Significance: 3e-99; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 170 - 550
Target Start/End: Original strand, 4839 - 5215
Alignment:
| Q |
170 |
gcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagctat |
269 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||||| | || |||||| |||| |
|
|
| T |
4839 |
gcttatagcctttcattattaatcaaagtagttatacaatgaggaatgttaagatgcaaatggaaactagcatgtgatagcgttt----agctaaactat |
4934 |
T |
|
| Q |
270 |
gggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaaatt |
369 |
Q |
| |
|
|||| |||| |||||||||||| ||||| |||||||||||||||||| |||| ||| |||| ||||| || |||||||| || || || |||||||||| |
|
|
| T |
4935 |
gggcaacaccattggcttgtcttctaatgaaactcacatcagagtttactaaatcggtcatcaacaagtgtctacaatcttgaattattgccataaaatc |
5034 |
T |
|
| Q |
370 |
agagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgcccactgcattgcc |
469 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| || |||||||| |||| |||||||||||| ||||||||||||| |
|
|
| T |
5035 |
agagacaccatttcctttataaacactatctgccacaatctttgagtctgtttcaaaatccatgctcaccatgttaagctctttcacccactgcattgct |
5134 |
T |
|
| Q |
470 |
tgcaacagacctatggcttcacccatctctatatcgagtaaaggggagagaaaggttgttcggcctgcgacaaaattacct |
550 |
Q |
| |
|
|| | ||| ||||| |||||||||||||||| ||| ||||||||||| | ||||| |||||| |||||||||||||||||| |
|
|
| T |
5135 |
tgtagcagtcctatcgcttcacccatctctacatcaagtaaaggggataaaaaggctgttcgacctgcgacaaaattacct |
5215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 160 - 380
Target Start/End: Complemental strand, 10985 - 10765
Alignment:
| Q |
160 |
agaaaaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttcccta |
259 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||| |||||||||||| || ||||||| || |||||||||||||||||||||||||||||| || |
|
|
| T |
10985 |
agaaaaggaattttattgcttttcattattaatcaaagtagttatacaatgtggaatattaaaatataattggaaactagcatgtgataatgcttcctta |
10886 |
T |
|
| Q |
260 |
gctaagctatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatgg |
359 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||| ||| ||| |||| ||||| || |||||||||||||| || | |
|
|
| T |
10885 |
gctaaactatgggcaacacgattggcttgtctcctaattaaactcacatcagagtttgttaaatcggtcatcaacaagtgtctacaatcatggataattg |
10786 |
T |
|
| Q |
360 |
ccataaaattagagacaccat |
380 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
10785 |
gcataaaatcagagacaccat |
10765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 168 - 423
Target Start/End: Complemental strand, 39648432 - 39648177
Alignment:
| Q |
168 |
aagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagct |
267 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| | |||||||||||| | | ||||||||||| ||| ||||||| ||||||| || |
|
|
| T |
39648432 |
aagcttatagcttttctttattaatcaaagaagttatacaatgtagaatattaagatgctactcgaaactagcataatatagtgcttccttagctaaact |
39648333 |
T |
|
| Q |
268 |
atgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaaa |
367 |
Q |
| |
|
|||||| ||||||||||| |||||| | || || ||||||| ||||| ||||| || |||| ||||| || ||||||||||| || |||||||||||| |
|
|
| T |
39648332 |
atgggcaacactattggcctgtctcttgatgaacttcacatctgagttcgctaaatcagtcatcaacaagtgtctacaatcatgaattatggccataaaa |
39648233 |
T |
|
| Q |
368 |
ttagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttc |
423 |
Q |
| |
|
| |||||||||||| ||||| ||||| || ||| | |||| |||||||||||||| |
|
|
| T |
39648232 |
tcagagacaccatcccctttgtaaatactgtctactacaactttagagtctgtttc |
39648177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 167 - 459
Target Start/End: Complemental strand, 12997432 - 12997140
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | |||||||| || ||||||||||| | |||||||||||||| || |||||||||||||| |
|
|
| T |
12997432 |
gaagcttatagcttttcattattaattaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagat |
12997333 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
||||||| |||||||||||||||||||||| || ||||||||||||| ||||| || ||||||| | ||| |||||||| || || |||||||| || |
|
|
| T |
12997332 |
tatgggcagcactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaaaagatgtctacaatcgtgtattatggccatgaa |
12997233 |
T |
|
| Q |
367 |
attagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgccca |
459 |
Q |
| |
|
|| ||||||||||| || ||||| || | ||| |||| | || ||||||||||| || ||||| |||| ||||| || ||||||||||| |
|
|
| T |
12997232 |
atctgagacaccatcccccttatagatattctctaccaccacttttgagtctgtttcaaaatccatatttactaaatttaggtctttcgccca |
12997140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 167 - 459
Target Start/End: Complemental strand, 26423399 - 26423107
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||| | || ||||||||||| | |||||||||||||| || |||||||||||||| |
|
|
| T |
26423399 |
gaagcttatagcttttcattattaatcaaagtatgaatacaacgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagat |
26423300 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||||||||||| |||| || ||||||| | ||| |||||||| || || ||| |||| || |
|
|
| T |
26423299 |
tatgggcaacactattggcttgtctcctaatgaacttcacatcagagttcactaaatcagtcattaatagatgtctacaatcgtgtattatgaccatgaa |
26423200 |
T |
|
| Q |
367 |
attagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgccca |
459 |
Q |
| |
|
|| ||||||||||| || ||||| || | |||||||| | || ||||| |||| ||| ||||| |||| ||||| || ||||||||||| |
|
|
| T |
26423199 |
atctgagacaccatcccccttatagatattctctgccaccacttttgagtccgttttgaaatccatatttactaaatttaggtctttcgccca |
26423107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 368
Target Start/End: Original strand, 26999250 - 26999364
Alignment:
| Q |
254 |
tccctagctaagctatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatgga |
353 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||||| ||||| || ||| ||||||||| |||| || ||||| ||||| || ||||||||| | | |
|
|
| T |
26999250 |
tccctagctaaactatgggcggctctattggcttgtcttctaatgaacttcaaatcagagttcactaaatcaatcatcaacaagtgtctacaatcacgaa |
26999349 |
T |
|
| Q |
354 |
tgatggccataaaat |
368 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
26999350 |
ttatagccataaaat |
26999364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 14150242 - 14150270
Alignment:
| Q |
169 |
agcttatagcttttcattattaatcaaag |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14150242 |
agcttatagcttttcattattaatcaaag |
14150270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 168 - 459
Target Start/End: Original strand, 22697557 - 22697848
Alignment:
| Q |
168 |
aagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagct |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||| || ||||||||||| | |||||||||||||| || |||||||||||||| | |
|
|
| T |
22697557 |
aagcttatagcttttcattattaatcaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagatt |
22697656 |
T |
|
| Q |
268 |
atgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaaa |
367 |
Q |
| |
|
|||||| ||||||||||||||||||||||| || ||||||||||||| ||||| || ||||||| | ||| |||||||| || || |||||||| ||| |
|
|
| T |
22697657 |
atgggcaacactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaatagatgtctacaatcgtgtattatggccatgaaa |
22697756 |
T |
|
| Q |
368 |
ttagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgccca |
459 |
Q |
| |
|
| ||||||||||| || ||||| || | |||||||| | || ||||| |||||||| ||||| |||| ||||| || ||||||||||| |
|
|
| T |
22697757 |
tctgagacaccatcccccttatagatattctctgccaccacttttgagtccgtttcgaaatccatatttactaaatttaggtctttcgccca |
22697848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 167 - 459
Target Start/End: Complemental strand, 31089607 - 31089315
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | |||||||| || ||||||||||| | |||||||||||||| || |||||||||||||| |
|
|
| T |
31089607 |
gaagcttatagcttttcattattaattaaagtatgaatacaatgtggaatattaagatgataatggaaactagcatgatttagtgcttccctagctagat |
31089508 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
||||||| |||||||||||||||||||||| || ||||||||||||| ||||| || ||||||| | ||| |||||||| || || |||||||| || |
|
|
| T |
31089507 |
tatgggcagcactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaaaagatgtctacaatcgtgtattatggccatgaa |
31089408 |
T |
|
| Q |
367 |
attagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgccca |
459 |
Q |
| |
|
|| ||||||||||| || ||||| || | ||| |||| | || ||||||||||| || ||||| |||| ||||| || ||||||||||| |
|
|
| T |
31089407 |
atctgagacaccatcccccttatagatattctctaccaccacttttgagtctgtttcaaaatccatatttactaaatttaggtctttcgccca |
31089315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 167 - 513
Target Start/End: Complemental strand, 24442746 - 24442400
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
||||||||||| |||| |||||||||||||| | |||||||| | ||||||||||| | |||||||||||||| || |||||| ||||||| |
|
|
| T |
24442746 |
gaagcttatagtttttaattattaatcaaagtatgaatacaatgtagaatattaagatgataatggaaactagcatgatttagtgcttctctagctagat |
24442647 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
||||||| |||||||||| |||||||||||| || ||||||||||||| ||||| || ||||||| | ||| |||||||| || || |||||||| || |
|
|
| T |
24442646 |
tatgggcaacactattggtttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaatagatgtctacaatcgtgtattatggccatgaa |
24442547 |
T |
|
| Q |
367 |
attagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgcccactgcatt |
466 |
Q |
| |
|
|| || |||||||| | ||||| || || |||||||| | || ||||| |||||||| ||||| |||||||||| || ||||||||||| |||| |
|
|
| T |
24442546 |
atctgatacaccatccctcttatagatactctctgccaccacttttgagtccgtttcgaaatccatatttaccaaatttaggtctttcgcccatcgcata |
24442447 |
T |
|
| Q |
467 |
gcctgcaacagacctatggcttcacccatctctatatcgagtaaagg |
513 |
Q |
| |
|
|| |||| || ||||| ||||||||||| || | ||| |||||||| |
|
|
| T |
24442446 |
gcatgcaggagtcctatagcttcacccatttccacatcaagtaaagg |
24442400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 167 - 468
Target Start/End: Complemental strand, 18678674 - 18678373
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || |||||||| |||| |||||||| | |||| |||||||| ||| || |||| ||||||| | |
|
|
| T |
18678674 |
gaagcttatagcttttcattattaattgaagtagaaatacaatgtaggatgttaagatgaacatggagactagcattgtatagtgattccttagctaaac |
18678575 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
|||| || ||||||||||||||||||||||| |||||||||| ||||||| |||| ||| | ||||||||| |||||||||| || || ||||| || |
|
|
| T |
18678574 |
tatgagcaacactattggcttgtctcctaatgaaactcacattagagtttactaaatcggtacctaacaaatgtctacaatcattaattattgccatgaa |
18678475 |
T |
|
| Q |
367 |
attagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgcccactgcatt |
466 |
Q |
| |
|
|| ||||||| | || | ||| |||||||||||||| || ||| ||| |||||||||||||||| |||| ||| |||||||| |||| |||||| |
|
|
| T |
18678474 |
atcagagacatcgtcctttccatatatgctatctgccactattttatagtttgtttcgaagtccatgtgcaccatattcagctcttttacccattgcatt |
18678375 |
T |
|
| Q |
467 |
gc |
468 |
Q |
| |
|
|| |
|
|
| T |
18678374 |
gc |
18678373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 167 - 432
Target Start/End: Original strand, 33304933 - 33305198
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||| || || |||||||| | |||| |||||| || || ||||||| ||||||| | |
|
|
| T |
33304933 |
gaagcttatagcttttcattattgatcaaagaagaaatacaatgtggaatgttaagatgaatgtggagactagcgtggtgtagtgcttccttagctaaac |
33305032 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
|||| || |||| |||| ||||||||||||| || ||||||||||||| |||| ||| | | ||||| || |||||||||| ||| || ||||| || |
|
|
| T |
33305033 |
tatgagcaacaccattgacttgtctcctaatgaacttcacatcagagttcactaaatcggtactcaacaagtgtctacaatcattgattattgccatgaa |
33305132 |
T |
|
| Q |
367 |
attagagacaccatctcctt--tataaatgctatctgccacaatcttagagtctgtttcgaagtccat |
432 |
Q |
| |
|
|| ||||||||| |||||| ||| |||||||| ||||||| || |||||||||||||||||||| |
|
|
| T |
33305133 |
atcagagacacc--ctccttgccatatatgctatcagccacaacttttgagtctgtttcgaagtccat |
33305198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 300
Target Start/End: Complemental strand, 20864177 - 20864042
Alignment:
| Q |
162 |
aaaaggaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagc |
261 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| | ||| |||| || || | ||| ||||||||| |||||| |||||| |||||||| |
|
|
| T |
20864177 |
aaaaagaagcttatagcttttcattattaatcaaagtatgaatagaatgtggaatgt---aatgaaattggaaaatagcattatgtaatgcctccctagc |
20864081 |
T |
|
| Q |
262 |
taagctatgggctacactattggcttgtctcctaataaa |
300 |
Q |
| |
|
|| |||||| || ||||| ||||||||||| |||||||| |
|
|
| T |
20864080 |
tatgctatgagcaacactgttggcttgtcttctaataaa |
20864042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 167 - 459
Target Start/End: Original strand, 17904654 - 17904946
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| || |||||| |||| | |||||||||||||| || || ||||||||||| |
|
|
| T |
17904654 |
gaagcttatagcttttcattattaatcaaagtatgtatacaatgtggaatattaggatgataatggaaactagcatgatttagtgtttccctagctagat |
17904753 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagtttgctaagtcgatcattaacaaatgcctacaatcatggatgatggccataaa |
366 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||||||||||| ||||| || ||||||| | || |||||||| | || |||||||| || |
|
|
| T |
17904754 |
tatgggcaacactattggcttgtctcctaatgaacttcacatcagagttcgctaaatcagtcattaataggtgtctacaatcgtatattatggccatgaa |
17904853 |
T |
|
| Q |
367 |
attagagacaccatctcctttataaatgctatctgccacaatcttagagtctgtttcgaagtccatgcttaccaaattaagctctttcgccca |
459 |
Q |
| |
|
|| ||||||||||| | ||||| || || ||| |||| | || ||||| |||||||| | ||| |||||||||| || ||||||||||| |
|
|
| T |
17904854 |
atctgagacaccatccctcttatagatactttcttccaccacttttgagtccgtttcgaaattcatatttaccaaatttaggtctttcgccca |
17904946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1476 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1476
Description:
Target: scaffold1476; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 314
Target Start/End: Original strand, 1238 - 1385
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || |||||||| || || ||| |||| | ||||| ||||||||| ||| ||||| | ||||||| | |
|
|
| T |
1238 |
gaagtttatagcttttcattattaatcaaagtagaaatacaatgtggaatgttacgatgaatttggagactagcatggtatagtgcttgcttagctaaac |
1337 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagt |
314 |
Q |
| |
|
|||| | ||| |||| ||| ||||| || ||||||||||| ||||| |
|
|
| T |
1338 |
tatgaacagcaccattgacttctctccgaacaaaactcacattagagt |
1385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0233 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0233
Description:
Target: scaffold0233; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 316
Target Start/End: Original strand, 19250 - 19399
Alignment:
| Q |
167 |
gaagcttatagcttttcattattaatcaaagaagttatacaatgagggatattaagatgcaattggaaactagcatgtgataatgcttccctagctaagc |
266 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||||| || ||||||||||| | |||| ||||| || | ||||||| ||| ||| | |
|
|
| T |
19250 |
gaagcttatagcttttcattattgatcaaagtaggaatacaatgtggaatattaagatgaatgtggagactagtgtggtgttgtgcttccttagttaaac |
19349 |
T |
|
| Q |
267 |
tatgggctacactattggcttgtctcctaataaaactcacatcagagttt |
316 |
Q |
| |
|
||| || |||| |||| ||||||||||||| || |||||||||||||| |
|
|
| T |
19350 |
tataagcaacaccattgacttgtctcctaatgaacttcacatcagagttt |
19399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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