View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11148_high_20 (Length: 286)
Name: NF11148_high_20
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 39504767 - 39504510
Alignment:
| Q |
17 |
cactacccagatacttcaaccacaacaaaatccaagtaacacccccgaccctcaggttccgcttcggaatctatccttggttcagacaagcatcgattct |
116 |
Q |
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| T |
39504767 |
cactacccagatacttcaaccacaacaaaatccaagtaacacccccgaccctcaggttccgcttcggaatctatccttggttcagacgagcatcgattct |
39504668 |
T |
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| Q |
117 |
ctccgaaccctcctgtcccaatccatcaccaccaacgctcctgtcaccaacgatcaattaaccgccgtctccaaccatatcttcactgtcctccaccata |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
39504667 |
ctccgaaccctcctgtcccaatccatcaccaccaacgctcctgtcaccaacgatcaattaaccgccgtctccaaccaaatcttcaccgtcctccaccata |
39504568 |
T |
|
| Q |
217 |
ccatagtcaacgccgccgccctcgttcctggcgcctccgtctttccctccgccacctt |
274 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
39504567 |
ccatagtcaacgccgccgccctcgttcctggcgtctccgtcttcccctccgccacctt |
39504510 |
T |
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