View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11148_high_27 (Length: 246)
Name: NF11148_high_27
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_high_27 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 34646194 - 34646421
Alignment:
| Q |
19 |
atgaaaaccaaaaccataagatccatcatgaagaaggacaagatctaaatttagggtttcctcacatctctgatttggttcagcaaaataacaacacttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34646194 |
atgaaaaccaaaaccataagatccatcatgaagaaggacaagatctaaatttagggtttcctcacatctctgatttggttcagcaaaataacaacacttc |
34646293 |
T |
|
| Q |
119 |
ttcttccacttcttcagcattggagcttcttacttcagggtttagttcaagttcaaggggtttgcattctttcatgcctgctcaagttcaaggttgtgga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34646294 |
ttcttccacttcttcagcattggagcttcttacttcagggtttagttcaagttcaaggggtttgcattctttcatgcctgctcaagttcaaggttgtgga |
34646393 |
T |
|
| Q |
219 |
tttcctttgcaagattttaagcaagtac |
246 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
34646394 |
tttcctttgcaagattttaagcaagtac |
34646421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University