View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11148_high_28 (Length: 245)
Name: NF11148_high_28
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 30960967 - 30960728
Alignment:
| Q |
1 |
gtgtggagcaagacctattgattcatgagaaaacgtaatgatgatctacc---cagaaagtaaaaataacttttaactcaaaataaatctacttccactt |
97 |
Q |
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| T |
30960967 |
gtgtggagcaagacctattgattcatgagaaaacgtaatgatgatctacctcccagaaagtaaaaataacttttaactcaaa-taaatctacttccactt |
30960869 |
T |
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| Q |
98 |
cttttactacttctattaattgttttaagtgtcttgggatggggcacattgcttcccaatgtacaatcaagagagctttggtcatcaaaggatggattaa |
197 |
Q |
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| T |
30960868 |
cttttactacttctattaattgttttaagtgtcttgggatggggtacattgcttcccaatgtacaaacaagagagctttggtcatcaaaggatggattaa |
30960769 |
T |
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| Q |
198 |
tgatgatcgaaaatgaaaaaagaaagtttacattcttctct |
238 |
Q |
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| T |
30960768 |
tgatgatcgaaagtgaaaaaagaaagtttacattcttctct |
30960728 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 3806353 - 3806436
Alignment:
| Q |
102 |
tactacttctattaattgttttaagtgtcttgggatggggcacattgcttcccaatgtacaatcaagagagctttggtcatcaa |
185 |
Q |
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| T |
3806353 |
tactacttctacgaaatgctttaagtgtcttggaagggggcacattgcttcccattgtccaaacaaaagagttttggtcatcaa |
3806436 |
T |
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