View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11148_high_3 (Length: 541)
Name: NF11148_high_3
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 527; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Complemental strand, 24952574 - 24952044
Alignment:
| Q |
1 |
cgttgatatccttctctctgcttgtccaatcttagaaactttggaactttccttttcaactgaatctttggccaagcttagggttccatcttccttgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24952574 |
cgttgatatccttctctctgcttgtccaatcttagaaactttggaactttccttttcaactgaatctttggccaagcttagggttccatcttccttgaaa |
24952475 |
T |
|
| Q |
101 |
agttttaaatttactatagagaatgacactgaagtttgtcttgagattgacacacctggtctcaagtaccttagcctcaccaatatcacatttggcaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24952474 |
agttttaaatttactatagagaatgacactgaagtttgtcttgagattgacacacctggtctcaagtaccttagcctcaccaatatcacatttggcaatg |
24952375 |
T |
|
| Q |
201 |
ccacttctattgggaacttgcacaacgtggaggaagcatatcttgatgcctcttctgaaagtgaatctgttgaccctttactcactctcctccaagctct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24952374 |
ccacttctattgggaacttgcacaacgtggaggaagcatatcttgatgcctcttctgaaagtgaatctgttgaccctttactcactctcctccaagctct |
24952275 |
T |
|
| Q |
301 |
ctctggcattaaacgtctagtgtttcgttgttatgcagcaaaggtgagtgaaattttcattatgcttgtgtattatatatttaaaaaatttgtgctaatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24952274 |
ctctggcattaaacgtctagtgtttcgttgttatgcagcaaaggtgagtgaaattttcattatgcttgtgtattatatatttaaaaaatttgtgctaatt |
24952175 |
T |
|
| Q |
401 |
ctcgtatctccacttgttgttattgtgtacgtaccaaaagaggagattattaggtactgaacctattatagattttccgaaaatgcacttttcagaattt |
500 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24952174 |
ctcgtatctccacttgttgttgttgtgtacgtaccaaaagaggagattattaggtactgaacctattatagattttccgaaaatgcacttttcagaattt |
24952075 |
T |
|
| Q |
501 |
cgctgcttactacatctagagcttattcttc |
531 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
24952074 |
cgctgcttactacatctagagcttattcttc |
24952044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 363
Target Start/End: Complemental strand, 20514096 - 20513726
Alignment:
| Q |
5 |
gatatccttctctctgcttgtccaatcttagaaactttggaactttccttttcaactgaatctttggccaagcttagggttccatcttccttgaaaagtt |
104 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||| ||||||| || |||| ||||||||||| | ||||||||| ||||||| |||| |
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|
| T |
20514096 |
gatatccttctctcaagctgcccaatcttagaaaccctggaacttgccttttctcctatatctctggccaagcttcgtgttccatctaccttgaagagtt |
20513997 |
T |
|
| Q |
105 |
ttaaatttactatagagaatgacactgaagtttgtcttgagattgacacacctggtctcaagtaccttagcctcaccaatatcacatttggcaatgccac |
204 |
Q |
| |
|
| ||| | ||| | || ||||||| || || ||| ||||||||||| |||| | |||||| |||||||||||||||| || ||||||| ||||| | |
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|
| T |
20513996 |
tgaaactcactgttgaaaatgacattggagcttgccttgagattgatgcacccgatctcaaataccttagcctcaccagaattacatttgccaatgatgc |
20513897 |
T |
|
| Q |
205 |
ttctattgggaacttgcacaacgtggaggaagcatatcttgatgcctcttc------------tgaaagtgaatctgttgaccctttactcactctcctc |
292 |
Q |
| |
|
| | |||||||||||||||||||| | |||||||||||||||| | ||| ||||| |||||| |||||||||||||||| ||||||| |
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|
| T |
20513896 |
tgcggttgggaacttgcacaacgtgaaagaagcatatcttgatgtattttccactcctgaaaatgaaaatgaatcggttgaccctttactcattctcctc |
20513797 |
T |
|
| Q |
293 |
caagctctctctggcattaaacgtctagtgtttcgttgttatgcagcaaaggtgagtgaaattttcattat |
363 |
Q |
| |
|
||||||||| |||| |||||||||||||| || || |||||| ||||||||||||||||||||||| |||| |
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|
| T |
20513796 |
caagctctcactggaattaaacgtctagtattgcgatgttatacagcaaaggtgagtgaaattttctttat |
20513726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 140 - 248
Target Start/End: Original strand, 24935112 - 24935220
Alignment:
| Q |
140 |
cttgagattgacacacctggtctcaagtaccttagcctcaccaatatcacatttggcaatgccacttctattgggaacttgcacaacgtggaggaagcat |
239 |
Q |
| |
|
||||| || ||| ||||||||||||||||||||||||||| |||||||||| || |||||||| || |||||||||| ||||||||||| ||||||| |
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|
| T |
24935112 |
cttgaaatagacgcacctggtctcaagtaccttagcctcaaacatatcacattctgcgatgccactgctgttgggaactttcacaacgtggaagaagcat |
24935211 |
T |
|
| Q |
240 |
atcttgatg |
248 |
Q |
| |
|
|||| |||| |
|
|
| T |
24935212 |
atctcgatg |
24935220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 314
Target Start/End: Original strand, 24958972 - 24959132
Alignment:
| Q |
160 |
tctcaagtaccttagcctcaccaatatcacatttggcaatgccacttctattgggaacttgcacaacgtggaggaagcatatcttgatg------cctct |
253 |
Q |
| |
|
|||||||| |||||||||||||||| | ||| | || |||| | ||||||| ||||||||||| ||||| ||||||| |||||||| || || |
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|
| T |
24958972 |
tctcaagttccttagcctcaccaatgttacaatcagccatgcagcaactattggaaacttgcacaaagtggaagaagcatttcttgatgtacttcccact |
24959071 |
T |
|
| Q |
254 |
tctgaaagtgaatctgttgaccctttactcactctcctccaagctctctctggcattaaac |
314 |
Q |
| |
|
||||||||||||||||||| |||||||| | |||||||| |||||||||||| ||||||| |
|
|
| T |
24959072 |
cctgaaagtgaatctgttgaacctttactgaatctcctccgagctctctctggaattaaac |
24959132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 320
Target Start/End: Original strand, 26027485 - 26027658
Alignment:
| Q |
153 |
cacctggtctcaagtaccttagcctcaccaatatcacatttggcaatgccacttctattgggaacttgcacaacgtggaggaagcatatcttgatg---- |
248 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | ||||| | || ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
26027485 |
cacctggtctcaagtaccttagccttgaatgtatcacattccgtgatgccgcggctgttgggaacttgcacagcgtggaagaagcatatcttgatgtatt |
26027584 |
T |
|
| Q |
249 |
--cctcttctgaaagtgaatctgttgaccctttactcactctcctccaagctctctctggcattaaacgtctag |
320 |
Q |
| |
|
|| || || |||||||||||||||| |||||||||| |||||| | |||||| || || ||||||| ||||| |
|
|
| T |
26027585 |
tcccactcctaaaagtgaatctgttgagcctttactcaatctccttcgagctctttccggaattaaacatctag |
26027658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 24530450 - 24530644
Alignment:
| Q |
135 |
tttgtcttgagattgacacacctggtctcaagtaccttagcctcaccaatatcacatttggcaatgccacttctattgg---gaacttgcacaacgtgga |
231 |
Q |
| |
|
|||| ||||| || ||| |||||| ||||||||||||||||||| || | |||||||| |||||| || |||| || |||||||||||||||||| |
|
|
| T |
24530450 |
tttgccttgaaatagacgcacctgctctcaagtaccttagcctcgccgctgtcacatttctcaatgctgctactatcggcgagaacttgcacaacgtgga |
24530549 |
T |
|
| Q |
232 |
ggaagcatatcttga-----tgcctcttc-tgaaagtgaatctgttgaccctttactcactctcctccaagctctctctggcattaaacgtctag |
320 |
Q |
| |
|
|||||| ||||||| | ||| || ||| |||||||||||||| |||||||||| ||||||| ||||||||||| |||||| ||||| |
|
|
| T |
24530550 |
agaagcagatcttgacctattttctcatcctgatagtgaatctgttgaacctttactcaaactcctccgtgctctctctggacttaaacatctag |
24530644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 140 - 324
Target Start/End: Complemental strand, 35188230 - 35188040
Alignment:
| Q |
140 |
cttgagattgacacacctggtctcaagtaccttagcctcaccaatatcacatttggcaatgccacttctattgggaacttgcacaacgtggaggaagcat |
239 |
Q |
| |
|
|||||||| ||| |||| ||||||||||| ||||||||| |||||||||||||||| |||| | | |||||||||| || | ||||| ||||||| |
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|
| T |
35188230 |
cttgagatagacgcaccaggtctcaagtatcttagcctcgtcaatatcacatttggcgatgctgccacagttgggaacttagaccaagtggaagaagcat |
35188131 |
T |
|
| Q |
240 |
atcttgatg------cctcttctgaaagtgaatctgttgaccctttactcactctcctccaagctctctctggcattaaacgtctagtgtt |
324 |
Q |
| |
|
||||||||| || || |||||| ||||||||| ||||||||| || |||| ||| |||||||||| | ||||||| ||||||||| |
|
|
| T |
35188130 |
atcttgatgtattttccactcctgaaaatgaatctgtcgaccctttattcgatctcttccgagctctctctagaattaaacatctagtgtt |
35188040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 40586283 - 40586376
Alignment:
| Q |
155 |
cctggtctcaagtaccttagcctcaccaatatcacatttggcaatgccacttctattgggaacttgcacaacgtggaggaagcatatcttgatg |
248 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||| ||||| |||||| ||||||||| |
|
|
| T |
40586283 |
cctgatctcaagtaccttagcctcaccaatatcatgtttcttaatgctgcttctgttgggaacttgcacaatgtggaagaagcacatcttgatg |
40586376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 40586414 - 40586474
Alignment:
| Q |
259 |
aagtgaatctgttgaccctttactcactctcctccaagctctctctggcattaaacgtcta |
319 |
Q |
| |
|
||||||||||||||| ||| ||||| ||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
40586414 |
aagtgaatctgttgaacctgtactccgtcttctccaagctctctctggaattaaacatcta |
40586474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 197 - 319
Target Start/End: Complemental strand, 11297642 - 11297514
Alignment:
| Q |
197 |
aatgccacttctattgggaacttgcacaacgtggaggaagcatatcttgatg------cctcttctgaaagtgaatctgttgaccctttactcactctcc |
290 |
Q |
| |
|
|||| |||| || |||||||| ||||||||||| | ||||||||||||| || || || ||||||||||||||||| || |||||||| ||||| |
|
|
| T |
11297642 |
aatggcactgcttttgggaacctgcacaacgtgaaagaagcatatcttgctgagttttccactcctgaaagtgaatctgttttccgtttactcaatctcc |
11297543 |
T |
|
| Q |
291 |
tccaagctctctctggcattaaacgtcta |
319 |
Q |
| |
|
|||||||||||||||| ||||||| |||| |
|
|
| T |
11297542 |
tccaagctctctctggaattaaacatcta |
11297514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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