View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11148_high_36 (Length: 224)

Name: NF11148_high_36
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11148_high_36
NF11148_high_36
[»] chr4 (17 HSPs)
chr4 (49-221)||(8184163-8184332)
chr4 (80-221)||(7226016-7226157)
chr4 (79-221)||(6006151-6006293)
chr4 (159-219)||(558402-558462)
chr4 (140-207)||(570236-570303)
chr4 (79-206)||(7307684-7307811)
chr4 (178-221)||(12121590-12121633)
chr4 (159-221)||(1489494-1489556)
chr4 (159-221)||(1513537-1513599)
chr4 (181-221)||(546839-546879)
chr4 (125-221)||(1545643-1545739)
chr4 (178-221)||(553402-553445)
chr4 (178-221)||(55505238-55505281)
chr4 (171-221)||(1524616-1524666)
chr4 (171-219)||(566105-566153)
chr4 (183-215)||(640843-640875)
chr4 (185-221)||(1534124-1534160)
[»] chr8 (3 HSPs)
chr8 (84-221)||(34936296-34936433)
chr8 (172-224)||(27922425-27922477)
chr8 (142-207)||(21235445-21235510)
[»] chr3 (4 HSPs)
chr3 (88-210)||(51121037-51121159)
chr3 (78-221)||(514861-515004)
chr3 (171-216)||(51764578-51764623)
chr3 (181-221)||(51113914-51113954)
[»] chr2 (2 HSPs)
chr2 (87-221)||(45245218-45245352)
chr2 (91-206)||(44575643-44575758)
[»] chr5 (3 HSPs)
chr5 (172-221)||(41901668-41901717)
chr5 (182-221)||(32267402-32267441)
chr5 (159-219)||(12845497-12845557)
[»] chr1 (1 HSPs)
chr1 (182-221)||(7554415-7554454)
[»] chr6 (14 HSPs)
chr6 (171-221)||(6394780-6394830)
chr6 (171-221)||(6594739-6594789)
chr6 (172-221)||(6432078-6432127)
chr6 (172-221)||(6603335-6603384)
chr6 (178-221)||(10579870-10579913)
chr6 (178-221)||(19632362-19632405)
chr6 (179-221)||(14818306-14818348)
chr6 (179-221)||(14820617-14820659)
chr6 (172-221)||(6585370-6585419)
chr6 (180-221)||(6589456-6589497)
chr6 (172-208)||(7119074-7119110)
chr6 (172-208)||(7131552-7131588)
chr6 (141-201)||(12102192-12102252)
chr6 (178-210)||(28934972-28935004)
[»] chr7 (1 HSPs)
chr7 (171-211)||(15092294-15092334)


Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 221
Target Start/End: Complemental strand, 8184332 - 8184163
Alignment:
Q  49 aatggtttcagagttgagggcaagaagagttggagcaattatctttctcaacgatggccttgaaagcagcatcggtgcaacaacatcagcgtgcacttta 148  Q
    |||||||||||| |||||||| | | ||||||||| |||||||||| ||||||||||||||||||| | ||| | ||   ||||||||||  ||||||||    
T  8184332 aatggtttcagaattgagggctacaggagttggaggaattatctttatcaacgatggccttgaaagtatcatggatg---caacatcagccagcacttta 8184236  T
Q  149 tgacagttcgtcaaattgatgactctcaattgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    | ||||||| |||||||||| ||| ||| ||||||||| ||||||| |||||||||||||||||  |||||||    
T  8184235 tcacagttcctcaaattgatcactttcagttgtgtgcaattttctagcacatgcttcactccctcatctgtga 8184163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 7226157 - 7226016
Alignment:
Q  80 ggagcaattatctttctcaacgatggccttgaaagcagcatcggtgcaacaacatcagcgtgcactttatgacagttcgtcaaattgatgactctcaatt 179  Q
    |||||||||||||||||||| ||||||||||||   | ||| |  ||||||| |||| | ||||||  | | |||||| ||||||||||  |||||| ||    
T  7226157 ggagcaattatctttctcaatgatggccttgaagaaaccattgaggcaacaatatcaccttgcactccacggcagttcttcaaattgatctctctcagtt 7226058  T
Q  180 gtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    |  |||||||||||||||| ||||||| ||||||||| ||||    
T  7226057 gcttgcagttttctaccacgtgcttcaatcccttctcggtga 7226016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 6006151 - 6006293
Alignment:
Q  79 tggagcaattatctttctcaacgatggccttgaaagcagcatcggtgcaacaacatcagcgtgcactttatgacagttcgtcaaattgatgactctcaat 178  Q
    ||||||| ||||||||||||| |||||||||| ||  | ||||    |||||||||||||   |||||||||||| | |  |||||| ||  ||||||||    
T  6006151 tggagcagttatctttctcaatgatggccttgtaaataccatcaagtcaacaacatcagctaccactttatgacaatcctgcaaatttatctctctcaat 6006250  T
Q  179 tgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    ||| ||||||||||||| || ||| |||||||||||| |||||    
T  6006251 tgtttgcagttttctacgacttgcatcactcccttctttgtga 6006293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 558402 - 558462
Alignment:
Q  159 tcaaattgatgactctcaattgtgtgcagttttctaccacatgcttcactcccttctctgt 219  Q
    ||||||||||  |||||| ||||||||||||||||| ||||||||||||||| || |||||    
T  558402 tcaaattgatttctctcatttgtgtgcagttttctagcacatgcttcactcctttatctgt 558462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 570236 - 570303
Alignment:
Q  140 tgcactttatgacagttcgtcaaattgatgactctcaattgtgtgcagttttctaccacatgcttcac 207  Q
    ||||||||||  |||||| ||||||||||  | |||| |||||||||||||||||||||||| |||||    
T  570236 tgcactttatagcagttcttcaaattgatctccctcagttgtgtgcagttttctaccacatgattcac 570303  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 7307684 - 7307811
Alignment:
Q  79 tggagcaattatctttctcaacgatggccttgaaagcagcatcggtgcaacaacatcagcgtgcactttatgacagttcgtcaaattgatgactctcaat 178  Q
    ||||||||||||||||||||| ||||||||||||   |  ||    |||||| | ||||||||||| | | | || ||| ||||||||||  | |||| |    
T  7307684 tggagcaattatctttctcaatgatggccttgaagatacaattaaggcaacagcgtcagcgtgcacgtcaaggcacttcctcaaattgatttccctcagt 7307783  T
Q  179 tgtgtgcagttttctaccacatgcttca 206  Q
    || |||||||||||||||||||||||||    
T  7307784 tgcgtgcagttttctaccacatgcttca 7307811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 12121633 - 12121590
Alignment:
Q  178 ttgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    ||||||||| |||||||||||||||||||||||| |||||||||    
T  12121633 ttgtgtgcatttttctaccacatgcttcactcccatctctgtga 12121590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 1489556 - 1489494
Alignment:
Q  159 tcaaattgatgactctcaattgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    ||||||||||  |||| | ||||| ||| ||||||| ||||||||||||||||||||||||||    
T  1489556 tcaaattgatctctcttagttgtgcgcatttttctagcacatgcttcactcccttctctgtga 1489494  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 1513599 - 1513537
Alignment:
Q  159 tcaaattgatgactctcaattgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    ||||||||||  |||||| ||||||||| ||||||| |||| ||||||||||| |||||||||    
T  1513599 tcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcccatctctgtga 1513537  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 546839 - 546879
Alignment:
Q  181 tgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  546839 tgtgcagttttctagcacatgtttcactcccttctctgtga 546879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 1545643 - 1545739
Alignment:
Q  125 gcaacaacatcagcgtgcactttatgacagttcgtcaaattgatgactctcaattgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    |||| ||||| ||| |||||||||| |||   | |||||||||| ||||| | |||||||||||||| |||| |||  ||||||||||||| |||||    
T  1545643 gcaataacattagcatgcactttatcacaacccctcaaattgatcactcttagttgtgtgcagttttttaccgcatctttcactcccttctatgtga 1545739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 553402 - 553445
Alignment:
Q  178 ttgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    |||||||||||||||||||||||| |||||||| || |||||||    
T  553402 ttgtgtgcagttttctaccacatgattcactcctttatctgtga 553445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 55505281 - 55505238
Alignment:
Q  178 ttgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    ||||||||||||||||| ||| || |||||||||||||||||||    
T  55505281 ttgtgtgcagttttctaacacgtgtttcactcccttctctgtga 55505238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 1524666 - 1524616
Alignment:
Q  171 ctctcaattgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    |||||| ||||||||||||||||| |||||  ||||||||| |||||||||    
T  1524666 ctctcagttgtgtgcagttttctatcacataattcactcccctctctgtga 1524616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 566105 - 566153
Alignment:
Q  171 ctctcaattgtgtgcagttttctaccacatgcttcactcccttctctgt 219  Q
    |||||| ||||||||||||||| ||||  || |||||||||||||||||    
T  566105 ctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgt 566153  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 640843 - 640875
Alignment:
Q  183 tgcagttttctaccacatgcttcactcccttct 215  Q
    ||||||||||||||||||| |||||||||||||    
T  640843 tgcagttttctaccacatgattcactcccttct 640875  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 1534160 - 1534124
Alignment:
Q  185 cagttttctaccacatgcttcactcccttctctgtga 221  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  1534160 cagttctctaccacatgcttaactcccttctctgtga 1534124  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 34936433 - 34936296
Alignment:
Q  84 caattatctttctcaacgatggccttgaaagcagcatcggtgcaacaacatcagcgtgcactttatgacagttcgtcaaattgatgactctcaattgtgt 183  Q
    ||||||||||||||||| |||||||||||   | |||||  | |||||||| ||| | ||||||||| |||||| ||||||||||  | |||||||||||    
T  34936433 caattatctttctcaacaatggccttgaagttatcatcgaggtaacaacattagcatccactttatggcagttcctcaaattgatctccctcaattgtgt 34936334  T
Q  184 gcagttttctaccacatgcttcactcccttctctgtga 221  Q
    ||| ||||| |||||| |||  ||||||||||| ||||    
T  34936333 gcaattttcaaccacacgctcaactcccttctccgtga 34936296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 27922425 - 27922477
Alignment:
Q  172 tctcaattgtgtgcagttttctaccacatgcttcactcccttctctgtgaaat 224  Q
    ||||| ||| |||||||||||||||||||| ||||||||||||| ||||||||    
T  27922425 tctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaat 27922477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 21235445 - 21235510
Alignment:
Q  142 cactttatgacagttcgtcaaattgatgactctcaattgtgtgcagttttctaccacatgcttcac 207  Q
    ||||||||  |||||| ||||||||||  | |||| |||||||||||||||||||||||| |||||    
T  21235445 cactttatagcagttcttcaaattgatctccctcagttgtgtgcagttttctaccacatgattcac 21235510  T

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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 51121159 - 51121037
Alignment:
Q  88 tatctttctcaacgatggccttgaaagcagcatcggtgcaacaacatcagcgtgcactttatgacagttcgtcaaattgatgactctcaattgtgtgcag 187  Q
    ||||||||||||||||| ||||||||  |  || |  ||||||| |||||| || |||||||  || | | |||| ||||| ||||||||||||||||||    
T  51121159 tatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcatggactttatagcaatacctcaagttgatcactctcaattgtgtgcag 51121060  T
Q  188 ttttctaccacatgcttcactcc 210  Q
    |||||||||||||| ||||||||    
T  51121059 ttttctaccacatgtttcactcc 51121037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 515004 - 514861
Alignment:
Q  78 ttggagcaattatctttctcaacgatggccttgaaagcagcatcggtgcaacaacatcagcgtgcactttatgacagttcgtcaaattgatgactctcaa 177  Q
    ||||||||| |||||||||||| |||||||||||||  | ||| || |||||||||| |   |||||||||| |||     | ||||||||  ||||||     
T  515004 ttggagcaactatctttctcaatgatggccttgaaaataccattggggcaacaacattataatgcactttattacaacctcttaaattgatctctctcag 514905  T
Q  178 ttgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    | ||||||||||||  |||||||||||||||||| |||||||||    
T  514904 tcgtgtgcagtttttcaccacatgcttcactcccgtctctgtga 514861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 51764623 - 51764578
Alignment:
Q  171 ctctcaattgtgtgcagttttctaccacatgcttcactcccttctc 216  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||    
T  51764623 ctctcaattgtgtgcagttttcaaccacatgtttcactcccttctc 51764578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 51113954 - 51113914
Alignment:
Q  181 tgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  51113954 tgtgcatttttctaccacatgcttcactcccttctctgtga 51113914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 45245352 - 45245218
Alignment:
Q  87 ttatctttctcaacgatggccttgaaagcagcatcggtgcaacaacatcagcgtgcactttatgacagttcgtcaaattgatgactctcaattgtgtgca 186  Q
    |||||||| ||||||||||||||||||  | |||||   ||| ||||| ||| ||||||| |   |||| | ||||||||||  || | | |||||||||    
T  45245352 ttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgca 45245253  T
Q  187 gttttctaccacatgcttcactcccttctctgtga 221  Q
     |||||||||||||| ||||||||||| |||||||    
T  45245252 attttctaccacatgtttcactcccttatctgtga 45245218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 206
Target Start/End: Complemental strand, 44575758 - 44575643
Alignment:
Q  91 ctttctcaacgatggccttgaaagcagcatcggtgcaacaacatcagcgtgcactttatgacagttcgtcaaattgatgactctcaattgtgtgcagttt 190  Q
    ||||||||| |||||||||||||| | || ||  |||| |||||||   ||||| |||| ||| ||  |||||||||   |||||  |||||||||||||    
T  44575758 ctttctcaatgatggccttgaaagtatcaacgaggcaagaacatcacgatgcacattatcacaatttctcaaattgagctctctcggttgtgtgcagttt 44575659  T
Q  191 tctaccacatgcttca 206  Q
    ||||||||||| ||||    
T  44575658 tctaccacatgattca 44575643  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 41901717 - 41901668
Alignment:
Q  172 tctcaattgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    ||||||||| || ||||||||||||||||||||||||||||||| |||||    
T  41901717 tctcaattgcgtacagttttctaccacatgcttcactcccttctttgtga 41901668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 32267402 - 32267441
Alignment:
Q  182 gtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  32267402 gtgcagttttctactacatgcttcactcccttctttgtga 32267441  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 12845497 - 12845557
Alignment:
Q  159 tcaaattgatgactctcaattgtgtgcagttttctaccacatgcttcactcccttctctgt 219  Q
    ||||||||||  ||||||| | |||||| ||| ||||||| ||| ||||||||||||||||    
T  12845497 tcaaattgatctctctcaactttgtgcattttgctaccacttgcctcactcccttctctgt 12845557  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 7554415 - 7554454
Alignment:
Q  182 gtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  7554415 gtgcagttttctaccacatgcttcactcccttttctgtga 7554454  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 6394780 - 6394830
Alignment:
Q  171 ctctcaattgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    ||||||||||||||||||||||||||||||| | ||| ||||| |||||||    
T  6394780 ctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtga 6394830  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 6594789 - 6594739
Alignment:
Q  171 ctctcaattgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    ||||||||||||||||||||||||||||||| ||  |||||| ||||||||    
T  6594789 ctctcaattgtgtgcagttttctaccacatgtttggctccctcctctgtga 6594739  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 6432078 - 6432127
Alignment:
Q  172 tctcaattgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    ||||||||||||||| |||||||||||| | ||||||||||||| |||||    
T  6432078 tctcaattgtgtgcatttttctaccacaagtttcactcccttctgtgtga 6432127  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 6603384 - 6603335
Alignment:
Q  172 tctcaattgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    ||||| |||| ||||||||||||||||||| |||||||| ||||||||||    
T  6603384 tctcagttgtttgcagttttctaccacatgtttcactcctttctctgtga 6603335  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 10579913 - 10579870
Alignment:
Q  178 ttgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    |||||||||||||||||||||||| || |||||||||| |||||    
T  10579913 ttgtgtgcagttttctaccacatgtttaactcccttctttgtga 10579870  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 19632362 - 19632405
Alignment:
Q  178 ttgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    |||| |||||||||||||||| || |||||||||||||||||||    
T  19632362 ttgtttgcagttttctaccacgtgtttcactcccttctctgtga 19632405  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 14818306 - 14818348
Alignment:
Q  179 tgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||    
T  14818306 tgtgtgcagttttctactacatgtttcacacccttctctgtga 14818348  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 14820617 - 14820659
Alignment:
Q  179 tgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    ||||||||||||| ||||||||| ||||| |||||||||||||    
T  14820617 tgtgtgcagttttttaccacatgtttcacacccttctctgtga 14820659  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 6585419 - 6585370
Alignment:
Q  172 tctcaattgtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    ||||| |||||||||  ||||||||||||| |||| ||||||||||||||    
T  6585419 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctctgtga 6585370  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 6589497 - 6589456
Alignment:
Q  180 gtgtgcagttttctaccacatgcttcactcccttctctgtga 221  Q
    |||||||||||||||||||||| |||||||||| ||| ||||    
T  6589497 gtgtgcagttttctaccacatgtttcactccctcctccgtga 6589456  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 7119074 - 7119110
Alignment:
Q  172 tctcaattgtgtgcagttttctaccacatgcttcact 208  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  7119074 tctcaattgtgtgcagttttcttccacatgtttcact 7119110  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 7131552 - 7131588
Alignment:
Q  172 tctcaattgtgtgcagttttctaccacatgcttcact 208  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  7131552 tctcaattgtgtgcagttttcttccacatgtttcact 7131588  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 12102192 - 12102252
Alignment:
Q  141 gcactttatgacagttcgtcaaattgatgactctcaattgtgtgcagttttctaccacatg 201  Q
    |||||||||  |||||| ||| |||| |  |||||| ||||||||||||||||||||||||    
T  12102192 gcactttatagcagttcttcagattgctctctctcagttgtgtgcagttttctaccacatg 12102252  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 28934972 - 28935004
Alignment:
Q  178 ttgtgtgcagttttctaccacatgcttcactcc 210  Q
    ||||||||| |||||||||||||||||||||||    
T  28934972 ttgtgtgcaattttctaccacatgcttcactcc 28935004  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 15092334 - 15092294
Alignment:
Q  171 ctctcaattgtgtgcagttttctaccacatgcttcactccc 211  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  15092334 ctctcaattgtgtgcagttttctagcacatgtttcactccc 15092294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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