View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11148_high_6 (Length: 444)
Name: NF11148_high_6
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 28217180 - 28216745
Alignment:
| Q |
1 |
tcaccgtcactttcagacacagaacctattgctgcactaccttttgaacaatgaggccgctgcatgcaattctaaggtggttcttcctttatctaggaaa |
100 |
Q |
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| T |
28217180 |
tcaccgtcactttcagacacagaacctattgctgcaccaccttt-gaacaatgattccgctgcatgcgattctaaggtggttcttcctttacctaggaaa |
28217082 |
T |
|
| Q |
101 |
aagattaagaaggagaagacgtgtgtcccaatggaagagactgataaagcatcgctgcgggacaggagtttcgatggaataggttttgtggacagcaatc |
200 |
Q |
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| T |
28217081 |
aagattaagaaggagaagacgtgtgtcccaatggaagagactgaaaaagcatcgctgtgggacaggtgttttgatggaatgggttttgtggacagcaatc |
28216982 |
T |
|
| Q |
201 |
taagcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaaaggctagtgatatgcttgtgg-----------cgctctgctttacttgggaa |
289 |
Q |
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| T |
28216981 |
taagcttcacaaaa-atgtgcaggaggtgaaggagtctgggttggaaaaggctagtgagatgcttgtggcatacaaccttcgctgtgctttacttcggaa |
28216883 |
T |
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| Q |
290 |
ggtgattatggaccaatttcaatctgtactgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaattaaaaatagccaatgatatt |
389 |
Q |
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| T |
28216882 |
ggtgattacggaccaatttcaatctgtattgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaattgaaaatagccaatgatatt |
28216783 |
T |
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| Q |
390 |
cttggagatatgaagaaacaaatattgaaggtaaataa |
427 |
Q |
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| T |
28216782 |
cttggagatatgaagaaacaaatattgaaggtaaataa |
28216745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 28238036 - 28237617
Alignment:
| Q |
1 |
tcaccgtcactttcagacacagaacctattgctgcactaccttttgaacaatgaggccgctgcatgcaattctaaggtggttcttcctttatctaggaaa |
100 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||| |||||||||| | |||||||| |
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| T |
28238036 |
tcaccgtcactttcagacgcagaacctattgctgcacaaccttt-gaacaatgaggccgctgcatgcgattctaaggctgttcttccttcacctaggaaa |
28237938 |
T |
|
| Q |
101 |
aagattaagaaggagaagacgtgtgtcccaatggaagagactgataaagcatcgctgcgggacaggagtttcgatggaataggttttgtggacagcaatc |
200 |
Q |
| |
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| T |
28237937 |
aggattaagaaggagaa-acttgtgtcccaatg----------------catcgctgtgggatgggaggtttgatggaatggattttgtggacagaaatc |
28237855 |
T |
|
| Q |
201 |
taagcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaaaggctagtgatatgcttgtggcg-----------ctctgctttacttgggaa |
289 |
Q |
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| T |
28237854 |
tatgcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaaaagctagtgagatgcttgtggcgtacaaccttcgctctgctttacttgggaa |
28237755 |
T |
|
| Q |
290 |
ggtgattatggaccaatttcaatctgtactgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaattaaaaatagccaatgatatt |
389 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28237754 |
ggtgattatggaccaatttcaatctgtactaggacatgaaagcaactgccaagacgaactgaatgcaaccaaagaaaaattgaaaatagccaatgatatt |
28237655 |
T |
|
| Q |
390 |
cttggagatatgaagaaacaaatattgaaggtaaataa |
427 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28237654 |
cttggagatatgaagaaacaaatattgaaggtaaataa |
28237617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 2 - 427
Target Start/End: Complemental strand, 28233223 - 28232788
Alignment:
| Q |
2 |
caccgtcactttcagacacagaacctattgctgcactaccttttgaacaatgaggccgctgcatgcaattctaaggtggttcttcctttatctaggaaaa |
101 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| || ||| |||||| ||| |||||||| |||||||||||||||| ||| | ||||||||| |
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| T |
28233223 |
caccgtcactttcagacaaagaacctattgctgcaccacgttt-gaacaacatggcagctgcatgtggttctaaggtggttctttcttcacctaggaaaa |
28233125 |
T |
|
| Q |
102 |
agattaagaaggagaagacgtgtgtcccaatggaagagactgataaagcatcgctgcgggacaggagtttcgatggaataggttttgtggacagcaatct |
201 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
28233124 |
ggattaagaaggagaagacttgtgtcccaatggaagggactgatatagcatcgctgtgggacaggaggttcgatggaatgggttttgtggacagcaatct |
28233025 |
T |
|
| Q |
202 |
aagcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaaaggctagtgatatgcttgtgg-----------cgctctgctttacttgggaag |
290 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||| ||| |||| || ||||||| ||||||||||||||||||||| |
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| T |
28233024 |
aagcttcacaaaagacgtgcaggaggtgaaggagtctgggttggaaaaagctggtgagattcttgtggcgtacagccttcgctctgctttacttgggaag |
28232925 |
T |
|
| Q |
291 |
gtgattatggaccaatttcaatctgtactgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaattaaaaatagccaatgatattc |
390 |
Q |
| |
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||||||| ||||||||| ||| || || |||||||| | |||||| ||| ||||||||||| ||||||||||| |||||| |||||||||||||||| || |
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| T |
28232924 |
gtgattacggaccaattccaagctttagtgggacatcatagcaactgccaagacgaactgattgcaaccaaaggaaaattgaaaatagccaatgatactc |
28232825 |
T |
|
| Q |
391 |
ttggagatatgaagaaacaaatattgaaggtaaataa |
427 |
Q |
| |
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|||| ||||||||||| || ||||||||||||||||| |
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| T |
28232824 |
ttggggatatgaagaagcacatattgaaggtaaataa |
28232788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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