View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11148_low_10 (Length: 403)
Name: NF11148_low_10
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 72 - 380
Target Start/End: Complemental strand, 43439682 - 43439377
Alignment:
| Q |
72 |
ggcctgacaagatcaatgttatgagatcagttgttccaggttgaccaagcaaaatgctttctggttttacaactctatgaacaacactaactcaatgata |
171 |
Q |
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| T |
43439682 |
ggcctgacaagatcaatgttatgagatcagttgttccaggttgaccaagcaaaatgctttctggttttacaactctatgaacaacactaactcaatgata |
43439583 |
T |
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| Q |
172 |
ttataaccttcttcacgtatttacacaccaattacacaatgctggttttatttgcttgctttaaaaatggtgctttcttacaagggtagctcattccata |
271 |
Q |
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| T |
43439582 |
ctataaccttcttcaagtatttacacaccaattacacaatgctggttttatttgcttgctttaaaaatggtgctttcttacaggggtagctcattccata |
43439483 |
T |
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| Q |
272 |
ggattttaccaagctcctgattttgcacatggcaatagaatgggcggagaatcaatttacggagagatctcctgtaaatgataagtttaagttaaaactt |
371 |
Q |
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| T |
43439482 |
ggatt---ccaagctcctgattttgcacatggcgatagaatgggcggagaatcaatttacggagagatctcctgtaaatgataagtttaagttaaaactt |
43439386 |
T |
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| Q |
372 |
gtttgctat |
380 |
Q |
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| T |
43439385 |
gtttgctat |
43439377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 43742214 - 43742134
Alignment:
| Q |
72 |
ggcctgacaagatcaatgttatgagatcagttgttccaggttgaccaagcaaaatgctttctggttttacaactctatgaa |
152 |
Q |
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| T |
43742214 |
ggcctgacaagatcaatgttatgagatcagttgttccaggttgaccaagaaaaatgctttctggttttacaactctatgaa |
43742134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 43439696 - 43439772
Alignment:
| Q |
1 |
ttcacataaaaaatcgttagtttgagttgaattttgttcatgcaactctgtcgcgtcattttctgctctcaggcctga |
78 |
Q |
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| T |
43439696 |
ttcacataaaaaatctttagtttgagttgaattttgt-cttgcagctctgtcgcgtcattttctgctctcaggcctga |
43439772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 43742228 - 43742304
Alignment:
| Q |
1 |
ttcacataaaaaatcgttagtttgagttgaattttgttcatgcaactctgtcgcgtcattttctgctctcaggcctga |
78 |
Q |
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| T |
43742228 |
ttcacataaaaaatctttagtttgagttgaattttgt-cttgcagctctgtcgcgtcattttctgctctcaggcctga |
43742304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 25642702 - 25642653
Alignment:
| Q |
289 |
tgattttgcacatggcaatagaatgggcggagaatcaatttacggagaga |
338 |
Q |
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| T |
25642702 |
tgattttacacatggcaatggaatgggcggagaatcaatttacggagaga |
25642653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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