View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11148_low_12 (Length: 396)
Name: NF11148_low_12
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 9995585 - 9995203
Alignment:
| Q |
1 |
ttataggaagataagttgtctctgtttgttaggttttatgtgaaggttcaatatgccttgctttatttttgagtaaattttttatgttagagtttactaa |
100 |
Q |
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| T |
9995585 |
ttataggaagataagttgtctctgtttgttatgttttatgtgaatgttcaatatgccttgttttatttttgagtaaattttttatgttagagtttactaa |
9995486 |
T |
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| Q |
101 |
ttaggtacttcacagttggatttgaaaatttctgcacatgttaatgttcttactgaattcttgttgtttttgttgtttccttgctttattgcttatcctc |
200 |
Q |
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| T |
9995485 |
ttaggtacttcacagttgtatttgaaaatttctgcacatgttaatgttcttactgaattattgttgtttttgttgtttccttgctttattgcttatcctc |
9995386 |
T |
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| Q |
201 |
tgtttgtactttgtattcttgaattcacagtttatgtgtatgtggattttaattaggaataaagatttgattcgacgaagacacgttacattctacagga |
300 |
Q |
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| T |
9995385 |
tgtt-------tgtattctagaactcacagtttatgtgtatgtggtttttaataaggaataaagatttgattcgacgaagacgcattacattctacagga |
9995293 |
T |
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| Q |
301 |
aggaaaagaatcttgccatcacagctcttgctggcagttctctgggtaagtattcatcatatttcccaactattttttaatggctttatct |
391 |
Q |
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| T |
9995292 |
aggaaaagaatcttgccatcacagctcttgcaggcagttctctgggtaagtattca-catatttcccaactattttttaatggctttatct |
9995203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 225 - 383
Target Start/End: Original strand, 38117316 - 38117475
Alignment:
| Q |
225 |
tcacagtttatgtgtatgtggatttta-attaggaataaagatttgattcgacgaagacacgttacattctacaggaaggaaaagaatcttgccatcaca |
323 |
Q |
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| T |
38117316 |
tcacaatttatgtgtatttggttttttgattaggaataaagatttgattcaacaaagacgcgtttcatttaacgggaagagaaagaatcttgccatcgca |
38117415 |
T |
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| Q |
324 |
gctcttgctggcagttctctgggtaagtattcatcatatttcccaactattttttaatgg |
383 |
Q |
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| T |
38117416 |
gctctagcaggcagttctctgggtaattatgcctcatacttcctaacattattttaatgg |
38117475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 38111385 - 38111469
Alignment:
| Q |
253 |
ttaggaataaagatttgattcgacgaagacacgttacattctacaggaaggaaaagaatcttgccatcacagctcttgctggcag |
337 |
Q |
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| T |
38111385 |
ttaggaataaagatttgattcaacgaagacgcgtttcattcaatgggaagaaaaagaatcttgccatcacagctcttgcaggcag |
38111469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 38116730 - 38116778
Alignment:
| Q |
5 |
aggaagataagttgtctctgtttgttaggttttatgtgaaggttcaata |
53 |
Q |
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| T |
38116730 |
aggaagatatgttgtctccgtttgttaggttttatgggaaggtttaata |
38116778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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