View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11148_low_14 (Length: 380)

Name: NF11148_low_14
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11148_low_14
NF11148_low_14
[»] chr3 (6 HSPs)
chr3 (1-367)||(10291879-10292243)
chr3 (209-361)||(10306422-10306574)
chr3 (16-238)||(10330028-10330248)
chr3 (186-298)||(10309240-10309352)
chr3 (186-284)||(10296575-10296673)
chr3 (264-298)||(10296681-10296715)
[»] chr8 (3 HSPs)
chr8 (46-256)||(32138593-32138801)
chr8 (197-250)||(29804288-29804341)
chr8 (87-175)||(29804366-29804454)


Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 10292243 - 10291879
Alignment:
Q  1 atgcagccaactcacgtggaagagccgttggcaaggacttgtgattctcaaagtcatagcttcaaaggagtatgttggattaaacacaattgtgctaacg 100  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10292243 atgcagccaactcacgtggaagagccggaggcaaggacttgtgattctcaaagtcatagcttcaaaggagtatgttggattaaacacaattgtgctaatg 10292144  T
Q  101 tgtgcaaaacagagggtttcaccggaggacattgtcatggcttccgtcgcagatgtttttgctctaaaccttgttnnnnnnnnnntgagagtattgtatg 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||    
T  10292143 tgtgcaaaacagagggtttcactggaggacattgtcatggcttccgtcgcagatgtttttgctctaaaccttgttaagaaaaa--tgagagtattgtatg 10292046  T
Q  201 agagatgatgcttccatcaccctttgtaattctgtttaatttgcaataatacggatagatgccattaatttctataatgagttttttgtttgtcttctat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||    
T  10292045 agagatgatgcttccatcaccctttgtaattctgtttaatttgcaataatacggatggatgccattaatttctataatgagctttttgtttatcttctat 10291946  T
Q  301 aatgccattaatttgtttgtcttcttttttctacctaagtaaaagagagtgaaatgaatgaatgaat 367  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10291945 aatgccattaatttgtttgtcttcttttttctacataagtaaaagagagtgaaatgaatgaatgaat 10291879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 209 - 361
Target Start/End: Complemental strand, 10306574 - 10306422
Alignment:
Q  209 tgcttccatcaccctttgtaattctgtttaatttgcaataatacggatagatgccattaatttctataatgagttttttgtttgtcttctataatgccat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10306574 tgcttccatcaccctttgtaattctgtttaatttgcaataatacggatggatgccattaatttctataatgagttttttgtttgtcttctataatgccat 10306475  T
Q  309 taatttgtttgtcttcttttttctacctaagtaaaagagagtgaaatgaatga 361  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  10306474 taatttgtttgtcatcttttttctacataagtaaaagagagtgaaatgaatga 10306422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 10330028 - 10330248
Alignment:
Q  16 gtggaagagccgttggcaaggacttgtgattctcaaagtcatagcttcaaaggagtatgttggattaaacacaattgtgctaacgtgtgcaaaacagagg 115  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||| |||    
T  10330028 gtggaagagccagaggcaaggacttgtgattctcaaagtcatagcttcaaaggagtatgttggattaaacacaattgtgctaatgtgggcttaacatagg 10330127  T
Q  116 gtttcaccggaggacattgtcatggcttccgtcgcagatgtttttgctctaaaccttgttnnnnnnnnnntgagagtattgtatgagagatgatgcttcc 215  Q
    |||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||          ||||| ||||||||||||||||||| ||||    
T  10330128 gttttactggaggacattgtcatggcttccgtcgcagatg-ttttgctctaaaccttgtt-aaaaaaatatgagaatattgtatgagagatgatggttcc 10330225  T
Q  216 atcaccctttgtaattctgttta 238  Q
    |||||| ||||||||| ||||||    
T  10330226 atcaccttttgtaattatgttta 10330248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 186 - 298
Target Start/End: Original strand, 10309240 - 10309352
Alignment:
Q  186 tgagagtattgtatgagagatgatgcttccatcaccctttgtaattctgtttaatttgcaataatacggatagatgccattaatttctataatgagtttt 285  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||||||||  || ||||| ||||||||||||||||||||||    
T  10309240 tgagaatattgtatgagagatgatggttccatcaccttttgtaattatgtttaattagcaataatacatatggatgctattaatttctataatgagtttt 10309339  T
Q  286 ttgtttgtcttct 298  Q
    |||||||||||||    
T  10309340 ttgtttgtcttct 10309352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 10296575 - 10296673
Alignment:
Q  186 tgagagtattgtatgagagatgatgcttccatcaccctttgtaattctgtttaatttgcaataatacggatagatgccattaatttctataatgagttt 284  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||  || ||||| |||||||||||||||||||||    
T  10296575 tgagaatattgtatgagagatgatggttccatcaccttttgtaattatgtttaatttgcaataatacatatggatgctattaatttctataatgagttt 10296673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 298
Target Start/End: Original strand, 10296681 - 10296715
Alignment:
Q  264 attaatttctataatgagttttttgtttgtcttct 298  Q
    |||||||||||||||||||||||||||||||||||    
T  10296681 attaatttctataatgagttttttgtttgtcttct 10296715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 256
Target Start/End: Complemental strand, 32138801 - 32138593
Alignment:
Q  46 tctcaaagtcatagcttcaaaggagtatgttggattaaacacaattgtgctaacgtgtgcaaaacagagggtttcaccggaggacattgtcatggcttcc 145  Q
    ||||||||||| || || |||||| ||||||  | | | || ||||||||||  ||||||  ||||||||||||||| |  |||| ||||| ||||||||    
T  32138801 tctcaaagtcacagttttaaaggactatgtttaagtgatcaaaattgtgctactgtgtgcttaacagagggtttcacagatggacgttgtcgtggcttcc 32138702  T
Q  146 gtcgcagatgtttttgctctaaaccttgttnnnnnnnnnntgagagtattgtatgagagatgatgcttccatcaccctttgtaattctgtttaatttgca 245  Q
    |||  |||||||||||||||||||||||||          ||||| ||||  ||||||||| ||| |||||||||| |||||||||   |||||||||||    
T  32138701 gtcagagatgtttttgctctaaaccttgtt--taaaagtttgagaatattccatgagagattatgattccatcaccttttgtaattgcttttaatttgca 32138604  T
Q  246 ataatacggat 256  Q
    |||||| ||||    
T  32138603 ataatatggat 32138593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 29804341 - 29804288
Alignment:
Q  197 tatgagagatgatgcttccatcaccctttgtaattctgtttaatttgcaataat 250  Q
    |||||||||||||| || ||||||| ||||||||| ||||||||||| ||||||    
T  29804341 tatgagagatgatgatttcatcaccttttgtaattgtgtttaatttggaataat 29804288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 29804454 - 29804366
Alignment:
Q  87 caattgtgctaacgtgtgcaaaacagagggtttcaccggaggacattgtcatggcttccgtcgcagatgtttttgctctaaaccttgtt 175  Q
    ||||||||||   |||||| |||| ||||||||| | |||||||| ||  | ||||||||||  |||||||||||| ||||||||||||    
T  29804454 caattgtgcttctgtgtgccaaactgagggtttccctggaggacactgcaaaggcttccgtcagagatgtttttgcactaaaccttgtt 29804366  T

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