View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11148_low_15 (Length: 376)
Name: NF11148_low_15
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 27596112 - 27596321
Alignment:
| Q |
18 |
agttttagcctttgagaagcctctaatgattgatcatggtgatgtaatccctatggctgacaaatattttgaagatattgatatttctggcgaaattgca |
117 |
Q |
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| T |
27596112 |
agttttagcctttgagaggcctctaatgattgatcatggtgatttaaaccctatggctgacaattattttgaaaatattgatatttttgggcaacttgca |
27596211 |
T |
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| Q |
118 |
aatcaaattgtggc-gtgagaaatagtctttgaaaccgtagcgacaatgatttttgaaacaataattttgagaggcaatatctcaacaatttgaattatt |
216 |
Q |
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| T |
27596212 |
aatcaaattgtggctatgaaaaacagtctttaaaaccgtagtgaaaatggtttttgaaacaataattttgagaggcaatatctcaacaatttgaattgtt |
27596311 |
T |
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| Q |
217 |
tatattcatc |
226 |
Q |
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| T |
27596312 |
tacattcatc |
27596321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 17186011 - 17185955
Alignment:
| Q |
18 |
agttttagcctttgagaagcctctaatgatt-gatcatggtgatgtaatccctatgg |
73 |
Q |
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| T |
17186011 |
agttttagcctttgagaagcctctaatgtttggaaaatggtgatttaatctctatgg |
17185955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 46888385 - 46888207
Alignment:
| Q |
36 |
gcctctaatgattgatcatggtgatgtaatccctatggctgacaaatattttgaagatattgatatttctggcgaaattgc-aaatcaaattgtggc-gt |
133 |
Q |
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| T |
46888385 |
gcctctaatgattgatcatgatgatttaatccctatggctgtcaattattttgaaaatattgat-cttctggacaaattacgaattaaaattgtgactat |
46888287 |
T |
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| Q |
134 |
gagaaatagtctttgaaaccgtagcgacaatgatttttgaaacaataattttgagaggcaatatctcaacaatttgaatt |
213 |
Q |
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| T |
46888286 |
gagacacaatctttgaaaccgcagtgttaatggtttttgaaccaataattttgagaaccaatatctcaacaatttgaatt |
46888207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 363
Target Start/End: Complemental strand, 46888183 - 46888087
Alignment:
| Q |
267 |
agaaagattgaatttctttaactccaaagtggtatggagaggtttttaataaaacaaaaaccaagaaaacaatgatcaaaattgttttctaatagtg |
363 |
Q |
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| T |
46888183 |
agaaagattgaatgtcttttactccaaaatcgtatggagaagtttttagtaaaataaaaagcaagaaaacaatgatcaaaattgtttcttaatagtg |
46888087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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