View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11148_low_16 (Length: 324)
Name: NF11148_low_16
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 37183522 - 37183819
Alignment:
| Q |
18 |
cattcaacctccactttcatgctttttatttcatcaacctgatcaatcttggttttcaggacttcttctctggtgtttttaacattcttttcgtccaaat |
117 |
Q |
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| T |
37183522 |
cattcaacctccactttcatgctttttatttcatcaacctgatcaatcttggttttcaggacttcttctctggtgtttttaacattcttttcgtccaaat |
37183621 |
T |
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| Q |
118 |
ctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37183622 |
ctgatataattccacagatcatctccaacaacaccgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttt |
37183721 |
T |
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| Q |
218 |
tcttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggctttgtacatttgaatcaacctcatcaccatcttcat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37183722 |
tcttaacatcggcataaattccggtttcacttggtatccattaatcgtatcctcaggccggcttcgtacatttgaatcaacctcatcaccatcttcat |
37183819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 37194654 - 37194951
Alignment:
| Q |
18 |
cattcaacctccactttcatgctttttatttcatcaacctgatcaatcttggttttcaggacttcttctctggtgtttttaacattcttttcgtccaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37194654 |
cattcaacctccactttcatgctttttatttcatcaacctgatcaatcttggttttcaggacttcttctctggtgtttttaacattcttttcgtccaaat |
37194753 |
T |
|
| Q |
118 |
ctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37194754 |
ctgatataattccacagatcatctccaacaacaccgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttt |
37194853 |
T |
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| Q |
218 |
tcttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggctttgtacatttgaatcaacctcatcaccatcttcat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37194854 |
tcttaacatcggcataaattccggtttcacttggtatccattaatcgtatcctcaggccggcttcgtacatttgaatcaacctcatcaccatcttcat |
37194951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 120 - 281
Target Start/End: Original strand, 37202695 - 37202856
Alignment:
| Q |
120 |
gatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttttc |
219 |
Q |
| |
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||||| |||||||| || |||||||||||| |||||||| ||| || ||||||| ||| ||||| |||||||||||||| ||||| | ||| |||||| |
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| T |
37202695 |
gatatgattccacaaattatctccaacaacgctgaacggcctttcactgactttgtcaaacaattattagcaatatctccgtgcttgctgattatttttg |
37202794 |
T |
|
| Q |
220 |
ttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggctt |
281 |
Q |
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||| || ||||| |||||| | |||||||| |||||||| ||||| ||||||||||||||| |
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| T |
37202795 |
ctaatatgggcatgaattcctgcttcacttgatatccattaatcgtttcctcaggccggctt |
37202856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 104 - 305
Target Start/End: Original strand, 37212051 - 37212252
Alignment:
| Q |
104 |
cttttcgtccaaatctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgc |
203 |
Q |
| |
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||||| ||||||||||||||| ||| |||||||| | ||||| || ||||||| ||||| || ||||||| || |||||||| | |||||||||||| |
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| T |
37212051 |
ctttttgtccaaatctgatattatttcacagatcgtatccaagaaagctgaacgaaatttcaccgactttgtcacacaattcttggtaatatctccatgt |
37212150 |
T |
|
| Q |
204 |
ttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggctttgtacatttgaatcaacctcat |
303 |
Q |
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|| ||||||||||||||||| |||| ||||||||| || |||||||| ||| ||| | | | ||||||||| ||||||| | | ||||||||||||| |
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| T |
37212151 |
ttgccgataatttttcttaatatcgacataaattctggcttcacttgatatatattaaccatgtcctcaggctggctttgcatttcagaatcaacctcat |
37212250 |
T |
|
| Q |
304 |
ca |
305 |
Q |
| |
|
|| |
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| T |
37212251 |
ca |
37212252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 37180587 - 37180684
Alignment:
| Q |
125 |
aattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataatttttcttaa |
223 |
Q |
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|||||||||||| ||||||||||| |||||| ||| || ||||||| || || |||||||| |||||||||||||| | ||||||||||||||| |
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| T |
37180587 |
aattccacagatgatctccaacaatttcgaacggtttttcaccgactttgtcacaca-ttcttagctatatctccatgcttgctgataatttttcttaa |
37180684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 7527711 - 7527817
Alignment:
| Q |
117 |
tctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctccatgcttaccgataattt |
216 |
Q |
| |
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||||| || ||| |||||||||| |||||||| ||| ||||||| |||| |||||| ||||||||| ||||||||||||||||| ||||||| || |
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| T |
7527711 |
tctgaaatgatttcacagatcattcccaacaacgctgcacggaatcttaccaactttgaagtgcaattcttcgcaatatctccatgcttgccgataactt |
7527810 |
T |
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| Q |
217 |
ttcttaa |
223 |
Q |
| |
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||||||| |
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| T |
7527811 |
ttcttaa |
7527817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 233
Target Start/End: Complemental strand, 414167 - 414034
Alignment:
| Q |
100 |
cattcttttcgtccaaatctgatataattccacagatcatctccaacaacactgaacggaattttacagactttgccaagcaattcttagcaatatctcc |
199 |
Q |
| |
|
||||||||| |||||| |||| ||| ||| |||| || |||||| |||| ||||||||| || ||| |||||| | ||| ||||| |||||||||| |
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| T |
414167 |
cattctttttgtccaactctgctatgatttcacaaattgcctccaagaacaatgaacggaacttcacaaactttgtcgtgcagttcttcacaatatctcc |
414068 |
T |
|
| Q |
200 |
atgcttaccgataatttttcttaacatcggcata |
233 |
Q |
| |
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|||||| ||||| ||||||||||| | ||||||| |
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| T |
414067 |
atgcttgccgatgatttttcttaataccggcata |
414034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 315
Target Start/End: Complemental strand, 5366948 - 5366813
Alignment:
| Q |
180 |
caattcttagcaatatctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccattgatcgtatcctcaggccggc |
279 |
Q |
| |
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|||||||||| ||||| || |||||| | | ||||||||||||| || ||||| ||||| || ||||||| ||||| || | ||| || |||||| ||| |
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| T |
5366948 |
caattcttagaaatatatcaatgcttgctggtaatttttcttaatataggcatgaattctggcttcacttcgtatcgataaaccgtgtcttcaggctggc |
5366849 |
T |
|
| Q |
280 |
tttgtacatttgaatcaacctcatcaccatcttcat |
315 |
Q |
| |
|
||||||| | |||| |||| |||||||||| |||| |
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| T |
5366848 |
tttgtacttccgaatgaaccccatcaccatcatcat |
5366813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 5365232 - 5365154
Alignment:
| Q |
180 |
caattcttagcaatatctccatgcttaccgataatttttcttaacatcggcataaattccggtttcacttggtatccat |
258 |
Q |
| |
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|||||||||| ||||| ||||||||| |||||||||||||||| || ||||| ||||| || ||||||| ||||||| |
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| T |
5365232 |
caattcttagaaatatatccatgcttgtcgataatttttcttaatataggcatgaattctggcttcactttatatccat |
5365154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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