View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11148_low_17 (Length: 323)
Name: NF11148_low_17
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 43742228 - 43742539
Alignment:
| Q |
1 |
ttcacataaaaaatcgttagtttgagttgaattttgttcatgcaactctgtcgcgtcattttctgctctcaggcctgatcggcaagcttgtctgcatttc |
100 |
Q |
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| T |
43742228 |
ttcacataaaaaatctttagtttgagttgaattttgt-cttgcagctctgtcgcgtcattttctgctctcaggcctgatcggcaagcttgtctgcacttc |
43742326 |
T |
|
| Q |
101 |
atggagaatgagtcatcagtaaggctgctcattttatttgagaccatgatttatagacattgtaagctggaaatagttggttcagtgttaattgtgctta |
200 |
Q |
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||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||| | |||| |||||||||||||||||||||||| |
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| T |
43742327 |
atgcagaatgagtcatcaccaaggctgctcgttttatttgagtccatgatttatagacgttgtaagccagcaataattggttcagtgttaattgtgctta |
43742426 |
T |
|
| Q |
201 |
aacttgtaatgtataacttttttaatatgctcgaagcttaaattgatattgagttatggaatggaacaaatataaagtatcacaaaaattcattttaagg |
300 |
Q |
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||||||||||||| |||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
43742427 |
aacttgtaatgtacaactttttgaacatgttcgaagcttaaattgattttgagttatggaatggaacaaatataaagtatcacaagaactcattttaagg |
43742526 |
T |
|
| Q |
301 |
ctccttccttcat |
313 |
Q |
| |
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||||||||||||| |
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| T |
43742527 |
ctccttccttcat |
43742539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 43439696 - 43440007
Alignment:
| Q |
1 |
ttcacataaaaaatcgttagtttgagttgaattttgttcatgcaactctgtcgcgtcattttctgctctcaggcctgatcggcaagcttgtctgcatttc |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
43439696 |
ttcacataaaaaatctttagtttgagttgaattttgt-cttgcagctctgtcgcgtcattttctgctctcaggcctgatcagcaagcttgtctgcacttc |
43439794 |
T |
|
| Q |
101 |
atggagaatgagtcatcagtaaggctgctcattttatttgagaccatgatttatagacattgtaagctggaaatagttggttcagtgttaattgtgctta |
200 |
Q |
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||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||| | |||| |||||||||||||||||||||||| |
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| T |
43439795 |
atgcagaatgagtcatcaccaaggctgctcgttttatttgagtccatgatttatagacgttgtaagccagcaataattggttcagtgttaattgtgctta |
43439894 |
T |
|
| Q |
201 |
aacttgtaatgtataacttttttaatatgctcgaagcttaaattgatattgagttatggaatggaacaaatataaagtatcacaaaaattcattttaagg |
300 |
Q |
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||||||||||||| |||||||| || ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
43439895 |
aacttgtaatgtacaactttttgaacatgttcgaagcttaaattgattttgagttatggaatggaacaaatataaagtatcacaagaactcattttaagg |
43439994 |
T |
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| Q |
301 |
ctccttccttcat |
313 |
Q |
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||||||||||||| |
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| T |
43439995 |
ctccttccttcat |
43440007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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