View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11148_low_18 (Length: 308)
Name: NF11148_low_18
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 28408316 - 28408599
Alignment:
| Q |
20 |
cgtaaaaatcatctgtgtaataaattgaatccttttgtagataattagcaaaatacgaagccgacatagatatagaatcactatcacccaaaaataaaac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28408316 |
cgtaaaaatcatctgtgtaataaattgaatccttttgtagataattagcaaaatacgaagccgacatagatatagaatcactatcacccaaaaataaaac |
28408415 |
T |
|
| Q |
120 |
attgtcacccaaactatcaagtcttaacatacgtataagcttaccacttttaagatccaattccaacttatacacttcaaatctttcggtaccacaacta |
219 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28408416 |
attgtctcccaaactatcaagtcttaacatatgtataagcttaccacttttaagatccaattccaacttatacacttcaaatctttcggtaccacaacta |
28408515 |
T |
|
| Q |
220 |
ggcgggttaatatcttcatcaatgtcatcatctccataaccaataaattttctaacaagccacaaatctccctcctatgcttct |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| |
|
|
| T |
28408516 |
ggcgggttaatatcttcatcaatgtcatcatctccataaccaataaattttctaacaagccacaagtctccctccaatgattct |
28408599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University