View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11148_low_23 (Length: 252)
Name: NF11148_low_23
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 54930716 - 54930491
Alignment:
| Q |
19 |
gttatcttctgagagtgattgagaggaaagagataaactactatctttctcttgttcatctccgtcgtggtgaagaatatcaccgccgttagagaagtca |
118 |
Q |
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| T |
54930716 |
gttatcttctgagagtgattgagaagaaggagataaactactctctttctcttgttcatctccgtcgtggtgaagaatatcaccgccgtgagagaagtca |
54930617 |
T |
|
| Q |
119 |
aggaggtcgtcaacggagaaatcttcaccggcaaccaccgtgttggcagtgaagctaaaaagttcctcgccgagagtttgttgaaaaacaaactcgcttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54930616 |
aggaggtcgtcaacggagaaatcttcaccggcaaccaccgtgttggcagtgaagctaaaaagttcctcgccgagagtttgttgaaaaacaaactcgcttc |
54930517 |
T |
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| Q |
219 |
ttaaactcggtttcaaagcctttgct |
244 |
Q |
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||||||||||||||||||| |||||| |
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| T |
54930516 |
ttaaactcggtttcaaagcttttgct |
54930491 |
T |
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