View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11148_low_26 (Length: 250)
Name: NF11148_low_26
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 34066916 - 34067095
Alignment:
| Q |
1 |
tgtctactaccttgatctgctgctcttctggagataaaatcttttcaagtatactatctctcaatctcctaaatgacatctttcttttcaaatcttaatc |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34066916 |
tgtctagtaccttgatctgctgctcttctggagataaaatcttttcaagtatactatctctcaatctcctaaatgacatctttcttttcaaatcttaatc |
34067015 |
T |
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| Q |
101 |
aagctaaaacatcctgaaaatacggaagacatacaaaataagctcatactttcagatgcaagtaagtacataaaatgaaa |
180 |
Q |
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| T |
34067016 |
aagctaaaacatcctgaaaatacggaagacatacaaaataagctcatactttcagatgcaagtaagtacataaaatgaaa |
34067095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 34067362 - 34067431
Alignment:
| Q |
171 |
taaaatgaaagaaaactagaggcacaaaggagaaaaccccaacctcttcagaaagcccccatattctctg |
240 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
34067362 |
taaaatgtaagaaaactagaggcacaaaggagaacaccccaacctcgtcagaaagcccccatattctctg |
34067431 |
T |
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