View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11148_low_36 (Length: 225)

Name: NF11148_low_36
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11148_low_36
NF11148_low_36
[»] scaffold0105 (6 HSPs)
scaffold0105 (1-225)||(556-780)
scaffold0105 (1-99)||(2073-2171)
scaffold0105 (1-99)||(6859-6957)
scaffold0105 (1-99)||(14224-14322)
scaffold0105 (1-99)||(50520-50618)
scaffold0105 (1-99)||(32122-32220)
[»] chr4 (4 HSPs)
chr4 (1-215)||(8183789-8184004)
chr4 (107-217)||(8186957-8187067)
chr4 (72-216)||(1600543-1600687)
chr4 (154-217)||(659832-659895)
[»] scaffold0345 (1 HSPs)
scaffold0345 (1-99)||(6759-6857)
[»] chr6 (1 HSPs)
chr6 (72-137)||(9411555-9411620)
[»] chr1 (2 HSPs)
chr1 (72-132)||(9586844-9586904)
chr1 (73-132)||(9581276-9581335)
[»] chr5 (1 HSPs)
chr5 (86-137)||(41889399-41889450)
[»] chr8 (1 HSPs)
chr8 (85-137)||(32151501-32151553)
[»] chr3 (1 HSPs)
chr3 (93-137)||(514580-514624)


Alignment Details
Target: scaffold0105 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 780 - 556
Alignment:
Q  1 aattataattctttaatggatattgttataagccctcaaataaagtctcgtagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaatgtttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  780 aattataattctttaatggatattgttataagccctcaaataaagtctcttagtttgcaagacagtggtgcgttaaaagataaaaacatcaaaatgtttg 681  T
Q  101 cttcagtattcccaaatttgcagctacttgatttgagtcatttcattgatatgtctgaagaagatatttgacaaattttaaggagatgttgtgaaattag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  680 cttcagtattcccaaatttgcagctacttgatttgagtcatttcattgatatgtctgaagaagatatttgacaaattttaagtagatgttgtgaaattag 581  T
Q  201 agaattgaacttagcctcgttttca 225  Q
    ||||||||||||||||| |||||||    
T  580 agaattgaacttagcctagttttca 556  T

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Target: scaffold0105; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 2171 - 2073
Alignment:
Q  1 aattataattctttaatggatattgttataagccctcaaataaagtctcgtagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaatgttt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2171 aattataattctttaatggatattgttataagccctcaaataaagtctcttagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaatgttt 2073  T

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Target: scaffold0105; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 6957 - 6859
Alignment:
Q  1 aattataattctttaatggatattgttataagccctcaaataaagtctcgtagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaatgttt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6957 aattataattctttaatggatattgttataagccctcaaataaagtctcttagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaatgttt 6859  T

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Target: scaffold0105; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 14322 - 14224
Alignment:
Q  1 aattataattctttaatggatattgttataagccctcaaataaagtctcgtagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaatgttt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14322 aattataattctttaatggatattgttataagccctcaaataaagtctcttagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaatgttt 14224  T

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Target: scaffold0105; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 50520 - 50618
Alignment:
Q  1 aattataattctttaatggatattgttataagccctcaaataaagtctcgtagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaatgttt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50520 aattataattctttaatggatattgttataagccctcaaataaagtctcttagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaatgttt 50618  T

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Target: scaffold0105; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 32122 - 32220
Alignment:
Q  1 aattataattctttaatggatattgttataagccctcaaataaagtctcgtagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaatgttt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32122 aattataattctttaatggatattgttataagccctcaaataaagtctcttagtttgcaaggcagtggtgcattaaaagataaaaacatcaaaatgttt 32220  T

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Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 8183789 - 8184004
Alignment:
Q  1 aattataattctttaatggatattgttataagccctcaaataaagtctcgta-gtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaatgttt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||  || | ||  ||||| |||||||||| ||||||  |||    
T  8183789 aattataattctttaatggatattgttataagccctcaaataaagtctcttaagtttgcaaatcaatcgttggttaacagataaaaacgtcaaaaaattt 8183888  T
Q  100 gcttcagtattcccaaatttgcagctacttgatttgagtcatttcattgatatgtctgaagaagatatttgacaaattttaaggagatgttgtgaaatta 199  Q
    ||||| || ||||| ||||||||||  |||||||||||||||| | |||| || |||||| ||| ||||   |||||||||||||| |||||||| ||||    
T  8183889 gcttccgtgttccccaatttgcagcggcttgatttgagtcattgctttgacatttctgaaaaaggtattactcaaattttaaggagttgttgtgagatta 8183988  T
Q  200 gagaattgaacttagc 215  Q
    |||| |||||||||||    
T  8183989 gagatttgaacttagc 8184004  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 8186957 - 8187067
Alignment:
Q  107 tattcccaaatttgcagctacttgatttgagtcatttcattgatatgtctgaagaagatatttgacaaattttaaggagatgttgtgaaattagagaatt 206  Q
    ||||||| ||||||||| | |||||||||||||||| |  ||| || |||||||||| |||||| ||| |||| | |||||||||||| ||||| || ||    
T  8186957 tattccccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggattt 8187056  T
Q  207 gaacttagcct 217  Q
    |||||||||||    
T  8187057 gaacttagcct 8187067  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 216
Target Start/End: Complemental strand, 1600687 - 1600543
Alignment:
Q  72 gttaaaagataaaaacatcaaaatgtttgcttc-agtattcccaaatttgcagctacttgatttgagtcatttcattgatatgtctgaagaagatatttg 170  Q
    |||| |||||| ||| |||| |||||||||||| | | ||||||| |||||| || |||||||||||   || |||| | || |||||||||| ||||||    
T  1600687 gttacaagatacaaagatcataatgtttgcttccaattttcccaa-tttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttg 1600589  T
Q  171 acaaattttaaggagatgttgtgaaattagagaattgaacttagcc 216  Q
     ||| |||||||||||| || | |||||||| | ||||||||||||    
T  1600588 tcaagttttaaggagattttctaaaattagacatttgaacttagcc 1600543  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 659895 - 659832
Alignment:
Q  154 tctgaagaagatatttgacaaattttaaggagatgttgtgaaattagagaattgaacttagcct 217  Q
    ||||||||||||||| | ||||||||||||||||||||| | |||||| | || ||||||||||    
T  659895 tctgaagaagatattggtcaaattttaaggagatgttgtaacattagatatttaaacttagcct 659832  T

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Target: scaffold0345 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 6857 - 6759
Alignment:
Q  1 aattataattctttaatggatattgttataagccctcaaataaagtctcgtagtttgcaaggcagtggtgcgttaaaagataaaaacatcaaaatgttt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6857 aattataattctttaatggatattgttataagccctcaaataaagtctcttagtttgcaaggcagtggtgcattaaaagataaaaacatcaaaatgttt 6759  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 9411620 - 9411555
Alignment:
Q  72 gttaaaagataaaaacatcaaaatgtttgcttcagtattcccaaatttgcagctacttgatttgag 137  Q
    ||||| ||||||||||||||||| |||||||||  | ||||| ||||||||||| |||||||||||    
T  9411620 gttaagagataaaaacatcaaaaggtttgcttccattttccccaatttgcagctgcttgatttgag 9411555  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 9586904 - 9586844
Alignment:
Q  72 gttaaaagataaaaacatcaaaatgtttgcttcagtattcccaaatttgcagctacttgat 132  Q
    ||||| |||||||||||||| ||||||||||||| | ||||| ||||||||||| ||||||    
T  9586904 gttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat 9586844  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 9581335 - 9581276
Alignment:
Q  73 ttaaaagataaaaacatcaaaatgtttgcttcagtattcccaaatttgcagctacttgat 132  Q
    |||| |||||||||||||| ||||||||||||| | ||||| ||||||||||| ||||||    
T  9581335 ttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat 9581276  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 41889399 - 41889450
Alignment:
Q  86 acatcaaaatgtttgcttcagtattcccaaatttgcagctacttgatttgag 137  Q
    |||||| ||||||||||||  | ||||| |||||||||||||||||||||||    
T  41889399 acatcataatgtttgcttccattttccctaatttgcagctacttgatttgag 41889450  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 32151553 - 32151501
Alignment:
Q  85 aacatcaaaatgtttgcttcagtattcccaaatttgcagctacttgatttgag 137  Q
    ||||||||||||||||||||  | ||||| |||||||| || |||||||||||    
T  32151553 aacatcaaaatgtttgcttccattttccctaatttgcaactgcttgatttgag 32151501  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 514580 - 514624
Alignment:
Q  93 aatgtttgcttcagtattcccaaatttgcagctacttgatttgag 137  Q
    ||||||||||||| | ||||| |||||||||||| ||||||||||    
T  514580 aatgtttgcttcaattttcccgaatttgcagctaattgatttgag 514624  T

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