View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11148_low_7 (Length: 443)
Name: NF11148_low_7
Description: NF11148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11148_low_7 |
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| [»] scaffold1252 (1 HSPs) |
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Alignment Details
Target: scaffold1252 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: scaffold1252
Description:
Target: scaffold1252; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 394
Target Start/End: Original strand, 1923 - 2299
Alignment:
| Q |
14 |
agaattgcattttattattttgcttactaagtttactttgtttttccatccattaactgtttgatttgcatgaaatagaattaccatagaattgaattgg |
113 |
Q |
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| T |
1923 |
agaattgcatttttttattttgcttactaagtttactttgtttttcaatcca----ctgtttgatttgcatgaaataggattaccatagaattgaattgg |
2018 |
T |
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| Q |
114 |
agttgagtaatgacttggttcttgtatagagtaatcaatagtttactgtgtgatttttctacatgagaaaaatgggaatttcatcctttgtttcaattat |
213 |
Q |
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| T |
2019 |
agttgagtaatgacttggttcttgtatagagtaatcaatagtttactgtgtgatttttctacatgagaaaaatgggaatttcatcctttgtttcaattat |
2118 |
T |
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| Q |
214 |
tatatgtagatgctttctttcaaattttgataatgatctgaatgtttttcaatggatcgatctctatacaactagtattgtatatctgattggaagtatt |
313 |
Q |
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| T |
2119 |
tatatgtagatgctttctttcaaattttgataatgatctgaatgtttttcaatggatcgatctctatacaactagtattgtatatctgattggaagtatt |
2218 |
T |
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| Q |
314 |
ttggactatgagaacagcaatattagtttgtatttcagagttcactactcaatgtcttggtgatcctattatcatcaatgt |
394 |
Q |
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| T |
2219 |
ttggactatgagaacagcaatattagtttgtatttcagagttcactactcaatgtcttggtgatcctattatcatcaatgt |
2299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 20883511 - 20883242
Alignment:
| Q |
14 |
agaattgcattttattattttgcttactaagtttactttgtttttccatccattaactgtttgatttgcatgaaatagaattaccatagaattgaattgg |
113 |
Q |
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| T |
20883511 |
agaattgcattttatttttttgctaactaagtttactttgttta------cattaactgtttgatttgcatgaaataggattaccatagaattgaattgg |
20883418 |
T |
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| Q |
114 |
agttgagtaatgacttggttctt-gtatagagtaatcaatagtttactgtgtgatttttctacatgagaaaaatgggaatttcatcctttgtttcaatta |
212 |
Q |
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| T |
20883417 |
agttgtgtagtgacttggttctttgtatagagtaatcaatagtttatt-tgtgatttttgtacttgaggaaaatgg-aatttcatcctttgcttcaattg |
20883320 |
T |
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| Q |
213 |
ttatatgtagatgctttctttcaaattttgataatgatctgaatgtttttcaatggatcgatctctatacaactagtattgt |
294 |
Q |
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| T |
20883319 |
ttatatgtagatgctttctttggaattttgataatgatctgaatgtttttcaatggatca----ctatacaactagtattgt |
20883242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 298 - 433
Target Start/End: Complemental strand, 20883107 - 20882972
Alignment:
| Q |
298 |
tctgattggaagtattttggactatgagaacagcaatattagtttgtatttcagagttcactactcaatgtcttggtgatcctattatcatcaatgttaa |
397 |
Q |
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| T |
20883107 |
tctgattggaagtattttggactgtgagaacagcattattagtttgtatttcagagttcgctacttaatgtccttgtgatcctattatcatcaatggaga |
20883008 |
T |
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| Q |
398 |
aaccataaataacttatgtgcatatgctttgttcat |
433 |
Q |
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| T |
20883007 |
aacgataaataacttatgtgcatatgctttgttcat |
20882972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 433
Target Start/End: Complemental strand, 15466622 - 15466568
Alignment:
| Q |
379 |
ctattatcatcaatgttaaaaccataaataacttatgtgcatatgctttgttcat |
433 |
Q |
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| T |
15466622 |
ctattatcatcaatgtaaaaacgataaataacttatgtgcatatgctttgttcat |
15466568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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