View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11149_high_1 (Length: 1139)
Name: NF11149_high_1
Description: NF11149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11149_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 642 - 1126
Target Start/End: Original strand, 48209438 - 48209922
Alignment:
| Q |
642 |
ttagcatgctataagttactatctgaattattggtataagcatatctagggggtaagttcaatcattcattttatggacacttactggaattcatgaacc |
741 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48209438 |
ttagcatgctataagttactatctgaattattggtataagcaaatctagggggtaagttcaatcattcattttatggacacttactggaattcatgaacc |
48209537 |
T |
|
| Q |
742 |
aataattcagatacatatcaatattattaaagaatttaggactcaaatttaagttaaaatcaaagttgcacattaaacttataacatgctaagtatgcta |
841 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48209538 |
aataattcagatatatatcaatattattaaagaattaaggactcaaatttaagttaaaatcaaagttgcacattaaacttataacatgctaagtatgcta |
48209637 |
T |
|
| Q |
842 |
ttgagctgcaatgtggtacgtagagattcatatagaaaaaatgaagaatgaacataagaaatctgaaacttaattacgtaaccattagctagctagatca |
941 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48209638 |
ttgagctgcaatgttgtacgtagagattcatatagaaaaaatgaagaatgaacataagaaatctgaaacttaattacgtaaccattagctagctagatca |
48209737 |
T |
|
| Q |
942 |
aagctctccttccttaacacagaagcaaggtgatacatgagcagaaatgtttcaatgcttcttttcattcctctgatacttctcaataaattgaagataa |
1041 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48209738 |
aagctcttcttccttaacacagaagcaaggtgatacatgagcagaaatgtttcaatgcttcttttcattcctctgatacttctcaataaattgaagataa |
48209837 |
T |
|
| Q |
1042 |
ttcctcctatcaataataatcctgttcatcttatcactgagacaagttccagaatcggttcctgttttaaatataacaataaaag |
1126 |
Q |
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| T |
48209838 |
ttcctcctatcaataataatcctgttcatcttatcactgagacaagttccagaatcggttcctgttttaaatataacaataaaag |
48209922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 145 - 513
Target Start/End: Original strand, 48207951 - 48208320
Alignment:
| Q |
145 |
ttttgacacacatgttgaacctcgtagaattttccaaaaaataatttatagacacgctcaatttt-ttatactcaattttgaattcttaattttaaccac |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48207951 |
ttttgacacacatgttgaacctcgtagaatttttcaaaaaataatttatagacacactcaatttttttatactcaattttgaattcttaattttaaccac |
48208050 |
T |
|
| Q |
244 |
tatatcttactcaatgtttcatcttactactttaaatttatttttgttcatgtcaaattgatcctaatcaatataattttcaacgtctctattgcatttt |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48208051 |
tatatcttactcaatgtttcatcttactactttaaatttatttttgttcatgtcaaattgatccttatcaatataattttcaacgtctctattgcatttt |
48208150 |
T |
|
| Q |
344 |
atgattgtcaacatcctaattctctaaattttctatttttgtcaccaccaacaaacccgaatgtgtttatggtgccaccagccaactctatggtgtagag |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
48208151 |
atgattgtcaacatcctaattctctaaattttctatttttgtcaccaccaacaaacccaaacgtgtttatggtgccaccagccaactctatggtgtagag |
48208250 |
T |
|
| Q |
444 |
ttcactcggtatgaacacaaaccaccaaagtatatattataatgttgagttccacaattttcaactcaat |
513 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
48208251 |
tttactcggtatgaacacaaaccaccaaagtatatattataaagtcgagttccacaattttcaactcaat |
48208320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 47656493 - 47656579
Alignment:
| Q |
27 |
agacggtgcttgcggcttttatgaaggtgctggcctagagacgtgtacgcacaggtgtattgaaagcttgttcgtgtcggttcgtgc |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||| | ||||||||||| |||||| ||| |||||||||||||||||| ||||||||| |
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|
| T |
47656493 |
agacggtgcttgcggcttttatgaaggtgctggtcaagagacgtgtaagcacagatgtgttgaaagcttgttcgtgtgggttcgtgc |
47656579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 582 - 640
Target Start/End: Original strand, 48208390 - 48208448
Alignment:
| Q |
582 |
ccggagagctattcacaatggataaggctcaaaatgttgaataaatagcatacttagca |
640 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48208390 |
ccggagagctattcacaatggataaggctcagaatgttgaataaatagcatacttagca |
48208448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 54922938 - 54923016
Alignment:
| Q |
23 |
gcgaagacggtgcttgcggcttttatgaaggtgctggcctagagacgtgtacgcacaggtgtattgaaagcttgttcgtg |
102 |
Q |
| |
|
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| T |
54922938 |
gcgaagacggtgcttgcgtcttttatgacggtgctagccaagagacgtgtacgcacagatgtgttg-aagcttgttcgtg |
54923016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1011 - 1093
Target Start/End: Complemental strand, 48217870 - 48217788
Alignment:
| Q |
1011 |
cctctgatacttctcaataaattgaagataattcctcctatcaataataatcctgttcatcttatcactgagacaagttccag |
1093 |
Q |
| |
|
||||||||| |||| || || |||||||||||||||||| ||| |||| |||| ||||||||| ||||| |||||||||||| |
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| T |
48217870 |
cctctgatatttcttgatgaagtgaagataattcctcctaacaacaatagtcctattcatcttagcactgtgacaagttccag |
48217788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 834 - 946
Target Start/End: Original strand, 48205260 - 48205376
Alignment:
| Q |
834 |
gtatgctattgagctgcaatgtggtacgtagagattcatatagaaaaaatgaagaatgaacataagaaatctgaaacttaattac--gtaa---ccatta |
928 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||||||||| |||| ||||||| || ||||||||||||||||||| ||||||| |||| |||||| |
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|
| T |
48205260 |
gtatgctattgaactgcaatgttgtacaaagagattcacatag-ccaaatgaacaaaaaacataagaaatctgaaacataattacatgtaacttccatta |
48205358 |
T |
|
| Q |
929 |
gctagctagatcaaagct |
946 |
Q |
| |
|
||||||| |||||||||| |
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| T |
48205359 |
gctagctggatcaaagct |
48205376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 9e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 11441904 - 11441783
Alignment:
| Q |
27 |
agacggtgcttgcggcttttatgaaggtgctggcctagagacgtgtacgcacaggtgtattgaaagcttgttcgtgtcggttcgtgcggnnnnnnnatcg |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||| ||||||||||| |||| |
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|
| T |
11441904 |
agacggtgcttgcggcttttatgaaggtgctggccaagagacgtgtaaacacagatgtgttgaaagcttgttcgtgtgggttcgtgcggtttttttatcg |
11441805 |
T |
|
| Q |
127 |
tgtgatatagcaacgctctttt |
148 |
Q |
| |
|
|| ||||||||||||||||||| |
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|
| T |
11441804 |
tgcgatatagcaacgctctttt |
11441783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1011 - 1079
Target Start/End: Original strand, 32586813 - 32586881
Alignment:
| Q |
1011 |
cctctgatacttctcaataaattgaagataattcctcctatcaataataatcctgttcatcttatcact |
1079 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||| |||||||| |||| ||||| ||| |||| |
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|
| T |
32586813 |
cctctgatacttcttaataaagtgaagataattcctcctgacaataatagtcctattcattttagcact |
32586881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 946 - 1009
Target Start/End: Original strand, 32586647 - 32586710
Alignment:
| Q |
946 |
tctccttccttaacacagaagcaaggtgatacatgagcagaaatgtttcaatgcttcttttcat |
1009 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| | ||||||| ||||| |||| |||| |
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|
| T |
32586647 |
tctccttccttgacacggaagcaaggtgatacatgagctggaatgtttgaatgcctcttctcat |
32586710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 19731724 - 19731683
Alignment:
| Q |
272 |
actttaaatttatttttgttcatgtcaaattgatcctaatca |
313 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
19731724 |
acttcaaatttatttttgtttatgtcaaatggatcctaatca |
19731683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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