View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11149_high_10 (Length: 345)

Name: NF11149_high_10
Description: NF11149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11149_high_10
NF11149_high_10
[»] chr8 (7 HSPs)
chr8 (23-341)||(10635791-10636100)
chr8 (213-345)||(24286468-24286600)
chr8 (188-342)||(44159316-44159470)
chr8 (213-341)||(36054987-36055115)
chr8 (213-337)||(40451890-40452014)
chr8 (217-337)||(31452052-31452171)
chr8 (213-337)||(28280397-28280521)
[»] chr4 (15 HSPs)
chr4 (186-344)||(16559972-16560132)
chr4 (186-344)||(19934443-19934601)
chr4 (213-344)||(31463298-31463429)
chr4 (213-337)||(22665662-22665786)
chr4 (186-344)||(51581434-51581593)
chr4 (187-344)||(54400183-54400338)
chr4 (212-344)||(27628838-27628970)
chr4 (188-341)||(2804325-2804474)
chr4 (212-315)||(33894076-33894179)
chr4 (227-337)||(26805699-26805809)
chr4 (229-307)||(29533555-29533632)
chr4 (280-341)||(49482975-49483036)
chr4 (214-334)||(54357728-54357848)
chr4 (282-344)||(55465536-55465597)
chr4 (210-310)||(7031615-7031713)
[»] chr5 (9 HSPs)
chr5 (186-345)||(33338218-33338376)
chr5 (186-344)||(11680188-11680343)
chr5 (212-337)||(28273372-28273497)
chr5 (212-336)||(5108409-5108532)
chr5 (218-337)||(8213025-8213143)
chr5 (193-301)||(41530402-41530510)
chr5 (186-341)||(24397457-24397610)
chr5 (213-272)||(19804518-19804577)
chr5 (305-341)||(19804581-19804617)
[»] chr7 (13 HSPs)
chr7 (188-342)||(3408166-3408320)
chr7 (186-343)||(44207609-44207767)
chr7 (213-344)||(39321143-39321276)
chr7 (192-344)||(16492005-16492157)
chr7 (205-341)||(5787235-5787371)
chr7 (232-337)||(45174517-45174622)
chr7 (186-321)||(675087-675221)
chr7 (213-344)||(10980916-10981047)
chr7 (213-344)||(36856518-36856649)
chr7 (228-337)||(35729451-35729560)
chr7 (228-298)||(24620778-24620849)
chr7 (189-239)||(7322934-7322984)
chr7 (282-342)||(34111906-34111966)
[»] chr1 (18 HSPs)
chr1 (188-344)||(39873296-39873453)
chr1 (189-344)||(37275239-37275394)
chr1 (186-344)||(48033874-48034032)
chr1 (186-344)||(26060163-26060324)
chr1 (213-340)||(2351225-2351352)
chr1 (188-331)||(38680884-38681027)
chr1 (186-342)||(3077022-3077177)
chr1 (213-337)||(30111750-30111874)
chr1 (213-342)||(4551040-4551169)
chr1 (186-321)||(12482352-12482486)
chr1 (188-342)||(15177001-15177155)
chr1 (247-341)||(21029295-21029389)
chr1 (213-314)||(4081206-4081307)
chr1 (219-303)||(32512083-32512167)
chr1 (258-345)||(16109859-16109946)
chr1 (213-336)||(8903951-8904072)
chr1 (247-337)||(46065316-46065407)
chr1 (287-329)||(22416674-22416716)
[»] chr3 (8 HSPs)
chr3 (186-336)||(46055751-46055901)
chr3 (198-343)||(38611332-38611477)
chr3 (226-340)||(38014655-38014769)
chr3 (186-344)||(20499306-20499463)
chr3 (214-330)||(36473310-36473426)
chr3 (228-331)||(32734520-32734623)
chr3 (213-299)||(52313468-52313553)
chr3 (285-337)||(24980126-24980178)
[»] chr2 (10 HSPs)
chr2 (186-344)||(9991418-9991576)
chr2 (233-342)||(3095064-3095173)
chr2 (249-344)||(36402437-36402532)
chr2 (186-343)||(32354707-32354864)
chr2 (213-345)||(41464257-41464389)
chr2 (186-342)||(6084681-6084838)
chr2 (213-330)||(40356405-40356521)
chr2 (186-279)||(5711164-5711257)
chr2 (228-285)||(18904248-18904305)
chr2 (188-262)||(39085772-39085846)
[»] chr6 (3 HSPs)
chr6 (186-339)||(22616846-22616997)
chr6 (213-336)||(6614884-6615007)
chr6 (212-337)||(31765774-31765899)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 23 - 341
Target Start/End: Original strand, 10635791 - 10636100
Alignment:
Q  23 agccatcactttttgtgttaaaatttaagctcacctacagggtaaaaagtatagaggagcaattagtactaacacgtacttctctgaacgctacacacat 122  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10635791 agccatcactttttgtgttaaaatt-aagttcacctacagggtaaaaagtatagaggagcaattagtactaacacgtacttctctgaacgctacacacat 10635889  T
Q  123 ttttcaatagat-cactataacactatactctcacacaaattaataataatnnnnnnnnnnnnnggaaatgctaaccattgcacttgagatattggataa 221  Q
    |||||||||||| |||||| ||||||||  ||||||||||||||||||||              ||||||  |||||||||  |||| |  |||||||||    
T  10635890 ttttcaatagatccactatgacactata--ctcacacaaattaataataa-------aaaaaaaggaaatattaaccattgtccttggggcattggataa 10635980  T
Q  222 atgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaaaactactaa 321  Q
    ||||||||||||||||||||| || || ||||||||||||| ||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  10635981 atgaacaaaaatagaaattttgtgttgaaaaatgataaaaagtagccaagttaacttataaaaagtttattaattattgtttccaatgtaaaactactaa 10636080  T
Q  322 ctttggttaccttaaccatt 341  Q
     |||| ||||||||||||||    
T  10636081 ttttgattaccttaaccatt 10636100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 213 - 345
Target Start/End: Complemental strand, 24286600 - 24286468
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    |||||||| | ||||||||||||||||||| || |||||| ||||||||| | ||||||| ||||| ||||| ||||| ||||| ||||||| ||| |||    
T  24286600 attggatagaggaacaaaaatagaaattttgtgttggaaagtgataaaaagtggtcaagtcaacttgtaaaatgtttagaaattattgtttctaatataa 24286501  T
Q  313 aactactaactttggttaccttaaccattgcct 345  Q
    ||||||||| |||||||||| ||||||||||||    
T  24286500 aactactaattttggttaccgtaaccattgcct 24286468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 188 - 342
Target Start/End: Complemental strand, 44159470 - 44159316
Alignment:
Q  188 aaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagt 287  Q
    |||||||||||||||| |||  || ||||||||||  |||||||||| ||||||| || |||||||||||||||| |||||||  ||| || |||||| |    
T  44159470 aaatgctaaccattgcccttaggacattggataaagtaacaaaaataaaaattttgtgttggaaaatgataaaaattagtcaaagtaatttgtaaaaaat 44159371  T
Q  288 ttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattg 342  Q
    |||||||||||| || |||||||||| ||| ||| ||| |||| |||||||||||    
T  44159370 ttataaattgttattcccaatgtaaagctattaattttagttatcttaaccattg 44159316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 213 - 341
Target Start/End: Original strand, 36054987 - 36055115
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    |||||||||| ||||||||||| ||||||| || |||||| ||||||||| | ||||| | ||||| ||||||||| | ||||||||||||| |||||||    
T  36054987 attggataaaggaacaaaaataaaaattttgtgttggaaagtgataaaaagtggtcaaatcaacttgtaaaaagttaacaaattgttgtttctaatgtaa 36055086  T
Q  313 aactactaactttggttaccttaaccatt 341  Q
    | ||||||| ||||||||| |||||||||    
T  36055087 agctactaattttggttactttaaccatt 36055115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 213 - 337
Target Start/End: Complemental strand, 40452014 - 40451890
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    |||||||||| |||||||||| |||||||| || |||||| ||||||||| || |||| | ||||| |||||| |||||||||||||||||||||  |||    
T  40452014 attggataaaggaacaaaaatggaaattttgtgttggaaagtgataaaaagtaatcaaatcaacttgtaaaaaatttataaattgttgtttccaacttaa 40451915  T
Q  313 aactactaactttggttaccttaac 337  Q
    ||||||||| |||| ||| ||||||    
T  40451914 aactactaattttgattatcttaac 40451890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 217 - 337
Target Start/End: Complemental strand, 31452171 - 31452052
Alignment:
Q  217 gataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaaaact 316  Q
    |||||| ||||||||||||||||| | || ||||||||||| |||| | ||||| | |||||  ||||| |||| ||||||||||||| |||||||| ||    
T  31452171 gataaaagaacaaaaatagaaattatgtgttggaaaatgatgaaaagtggtcaaatcaacttgaaaaaa-tttacaaattgttgtttctaatgtaaagct 31452073  T
Q  317 actaactttggttaccttaac 337  Q
    | ||| |||||||||||||||    
T  31452072 attaattttggttaccttaac 31452052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 337
Target Start/End: Complemental strand, 28280521 - 28280397
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    |||||||||  ||| ||||||| |||| || || |||||||||||||||| | ||||||| |||||||| ||| |||  |||| |||||||  ||| |||    
T  28280521 attggataagagaataaaaatataaatattgtgttggaaaatgataaaaagtggtcaagtcaacttatataaaattttaaaatcgttgtttttaatataa 28280422  T
Q  313 aactactaactttggttaccttaac 337  Q
    | | ||||| |||| ||||||||||    
T  28280421 agcaactaattttgattaccttaac 28280397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 186 - 344
Target Start/End: Original strand, 16559972 - 16560132
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaata--gtcaagttaacttataaa 283  Q
    |||||||||||||||||| |||| |  |||||||||| ||| ||||||||||||||| || ||||||||||||||||| |  ||||||| ||||| ||||    
T  16559972 ggaaatgctaaccattgcccttggggcattggataaaggaataaaaatagaaattttgtgttggaaaatgataaaaaaaatggtcaagtcaacttgtaaa 16560071  T
Q  284 aagtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgcc 344  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16560072 aagtttataaattgttgtttccaatgtaaaactactaattttggttaccttaaccattgcc 16560132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 186 - 344
Target Start/End: Original strand, 19934443 - 19934601
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaa 285  Q
    ||||| ||||||||||||  ||| ||||||||| ||| ||||||||||| ||||||| |  |||||||||||||||||| ||||||| ||||| ||||||    
T  19934443 ggaaaggctaaccattgcctttgggatattggagaaaggaacaaaaataaaaattttgtattggaaaatgataaaaaatggtcaagtcaacttgtaaaaa 19934542  T
Q  286 gtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgcc 344  Q
    ||||||||||||||||||  |||||||||||||||| |||||||| |||||||||||||    
T  19934543 gtttataaattgttgtttttaatgtaaaactactaattttggttatcttaaccattgcc 19934601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 213 - 344
Target Start/End: Original strand, 31463298 - 31463429
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    |||||||||| ||||||||||||||||||| || |||||| || |||||| | ||||||| ||||| ||||||||||| |||||||||||||||| ||||    
T  31463298 attggataaaggaacaaaaatagaaattttgtgttggaaagtggtaaaaagtggtcaagtcaacttgtaaaaagtttacaaattgttgtttccaacgtaa 31463397  T
Q  313 aactactaactttggttaccttaaccattgcc 344  Q
    ||||||||| ||||||||||| ||||||||||    
T  31463398 aactactaattttggttacctcaaccattgcc 31463429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 213 - 337
Target Start/End: Complemental strand, 22665786 - 22665662
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    |||||||||  ||||||||||||||||||| || |||||||||||||||| | ||||||| || || ||||||||||| |||||||||||||||||||||    
T  22665786 attggataagggaacaaaaatagaaattttctgttggaaaatgataaaaagtggtcaagtcaaattgtaaaaagtttacaaattgttgtttccaatgtaa 22665687  T
Q  313 aactactaactttggttaccttaac 337  Q
    ||||| ||| |||||||||||||||    
T  22665686 aactattaaatttggttaccttaac 22665662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 186 - 344
Target Start/End: Original strand, 51581434 - 51581593
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaa-tagtcaagttaacttataaaa 284  Q
    |||||||||||  | ||| ||||||  |||||||||| ||||||||||||||||||| || |||||| |||||||||| | ||||||||||||| |||||    
T  51581434 ggaaatgctaaagagtgcccttgaggcattggataaaggaacaaaaatagaaattttgtgttggaaagtgataaaaaagtggtcaagttaacttgtaaaa 51581533  T
Q  285 agtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgcc 344  Q
      |||| |||||||||||| ||||||||| | ||||| ||||||||||||||||||||||    
T  51581534 catttacaaattgttgttttcaatgtaaagcgactaattttggttaccttaaccattgcc 51581593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 187 - 344
Target Start/End: Complemental strand, 54400338 - 54400183
Alignment:
Q  187 gaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaag 286  Q
    ||||||||||||||||| || | |  |||||||||| ||| ||||||| ||||||| || |||||||||||||||| | || |||| ||||| |||||||    
T  54400338 gaaatgctaaccattgccctcggggcattggataaaggaataaaaataaaaattttgtgttggaaaatgataaaaa-tggttaagtcaacttgtaaaaag 54400240  T
Q  287 tttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgcc 344  Q
    ||||||| ||||||||||| ||||||| ||| ||| ||||||||||||||||||||||    
T  54400239 tttataa-ttgttgtttccgatgtaaagctattaattttggttaccttaaccattgcc 54400183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 212 - 344
Target Start/End: Complemental strand, 27628970 - 27628838
Alignment:
Q  212 tattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgta 311  Q
    ||||||||||| ||||||||||| |||  || || ||||||||||| |||| | ||||||| ||||| |||||||||||||||||||||||| |||||||    
T  27628970 tattggataaaagaacaaaaataaaaaaattttgttggaaaatgattaaaagtggtcaagtcaacttgtaaaaagtttataaattgttgttttcaatgta 27628871  T
Q  312 aaactactaactttggttaccttaaccattgcc 344  Q
    || ||||||| | |||||||| |||||||||||    
T  27628870 aagctactaattctggttaccataaccattgcc 27628838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 188 - 341
Target Start/End: Complemental strand, 2804474 - 2804325
Alignment:
Q  188 aaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagt 287  Q
    ||||| |||||||||| |||| |||  || ||||| ||||||||||||||||||| || |||||||||||||||| ||||||||| ||||| ||||||||    
T  2804474 aaatgataaccattgcccttgggat--tgaataaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtagtcaagtcaacttgtaaaaagt 2804377  T
Q  288 ttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccatt 341  Q
    ||||||||| || |||  ||| |||||||||||| |||| |||| |||||||||    
T  2804376 ttataaattattattt--aatataaaactactaattttgcttacattaaccatt 2804325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 212 - 315
Target Start/End: Complemental strand, 33894179 - 33894076
Alignment:
Q  212 tattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgta 311  Q
    ||||||||||| ||||||||||| ||||||| || | || | ||||||||| |||| |||| || || ||||||||||||||||||||||||| ||||||    
T  33894179 tattggataaaggaacaaaaataaaaattttgtgttagatagtgataaaaagtagtaaagtcaatttgtaaaaagtttataaattgttgtttcgaatgta 33894080  T
Q  312 aaac 315  Q
    ||||    
T  33894079 aaac 33894076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 227 - 337
Target Start/End: Original strand, 26805699 - 26805809
Alignment:
Q  227 caaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaaaactactaactttg 326  Q
    ||||||||||||  | ||| || ||| || |||||| | ||||||| | ||| ||||||||||| |||||||||||||||||||||| ||||||| ||||    
T  26805699 caaaaatagaaaaatgatgttgaaaagtggtaaaaagtggtcaagtcagcttgtaaaaagtttaaaaattgttgtttccaatgtaaagctactaattttg 26805798  T
Q  327 gttaccttaac 337  Q
    |||||||||||    
T  26805799 gttaccttaac 26805809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 29533555 - 29533632
Alignment:
Q  229 aaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaa 307  Q
    |||||||||||||| || |||||||||||||||| ||||||||| ||||| |||||||||||| |||||||||||||||    
T  29533555 aaaatagaaattttttgttggaaaatgataaaaagtagtcaagtcaacttgtaaaaagtttat-aattgttgtttccaa 29533632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 49482975 - 49483036
Alignment:
Q  280 taaaaagtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccatt 341  Q
    |||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||    
T  49482975 taaaaagtttataaattgttgttttcaatgtaaagctactaattttggttaccttaaccatt 49483036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 334
Target Start/End: Original strand, 54357728 - 54357848
Alignment:
Q  214 ttggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaaa 313  Q
    |||||||||  |||||||||| ||||  | || || ||| |||| |||| | ||||| ||||||| ||||||||||| |||||||| ||| |||||||||    
T  54357728 ttggataaagaaacaaaaataaaaataatgtgttgaaaagtgatgaaaagtggtcaaattaacttgtaaaaagtttacaaattgttcttttcaatgtaaa 54357827  T
Q  314 actactaactttggttacctt 334  Q
      || ||| ||||||||||||    
T  54357828 gttattaattttggttacctt 54357848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 55465536 - 55465597
Alignment:
Q  282 aaaagtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgcc 344  Q
    ||||||||| ||||||| ||||| ||| |||||||||||  ||||||| ||||||||||||||    
T  55465536 aaaagttta-aaattgtagtttctaatataaaactactatttttggtttccttaaccattgcc 55465597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 310
Target Start/End: Complemental strand, 7031713 - 7031615
Alignment:
Q  210 gatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatg 309  Q
    ||||||||||||  ||||||||||| |||| || || || ||| ||||||||| | || || | |||||||  |||||||| || |||||||||||||||    
T  7031713 gatattggataacggaacaaaaataaaaatattttgttgaaaagtgataaaaagtggtaaaatcaacttat--aaagtttaaaatttgttgtttccaatg 7031616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 186 - 345
Target Start/End: Original strand, 33338218 - 33338376
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaa 285  Q
    |||||||||||| ||||| |||||   |||||||||| ||| ||||||||| ||||| |  |||||||||||||||| ||||||||| ||||||||||||    
T  33338218 ggaaatgctaactattgcccttgatgcattggataaaggaataaaaatagatattttgtt-tggaaaatgataaaaagtagtcaagtcaacttataaaaa 33338316  T
Q  286 gtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgcct 345  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  33338317 gtttataaattgttgtttccaatgtaaaactactaattttggttactttaaccattgcct 33338376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 186 - 344
Target Start/End: Original strand, 11680188 - 11680343
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaa 285  Q
    |||||||||||||||||| |||| | | ||| ||||| ||||||||||||||||||| || ||||||||||||||| ||||| |||| ||||| ||||||    
T  11680188 ggaaatgctaaccattgcccttggggttttgaataaaggaacaaaaatagaaattttgtgttggaaaatgataaaagatagttaagtcaacttgtaaaaa 11680287  T
Q  286 gtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgcc 344  Q
    ||    ||||||||||||||| |||||| ||| ||| ||||||||| ||||||||||||    
T  11680288 gt---caaattgttgtttccagtgtaaagctattaattttggttactttaaccattgcc 11680343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 337
Target Start/End: Original strand, 28273372 - 28273497
Alignment:
Q  212 tattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgta 311  Q
    ||||| ||||| ||||||||||||||| ||| || | |||||||||||||| | || || | ||||||||| ||||||||||||||||||||||||| ||    
T  28273372 tattgaataaaggaacaaaaatagaaactttgtgttagaaaatgataaaaagtggttaaatcaacttataacaagtttataaattgttgtttccaatata 28273471  T
Q  312 aaactactaactttggttaccttaac 337  Q
    |||||||||| |||||||||||||||    
T  28273472 aaactactaattttggttaccttaac 28273497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 212 - 336
Target Start/End: Original strand, 5108409 - 5108532
Alignment:
Q  212 tattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgta 311  Q
    ||||||||||| |||||||| || |  |||| || || ||||| ||||||| | |||||||||| || |||||| |||||||||||||||||||||||||    
T  5108409 tattggataaaggaacaaaagta-attttttttgttgaaaaataataaaaagtggtcaagttaatttgtaaaaactttataaattgttgtttccaatgta 5108507  T
Q  312 aaactactaactttggttaccttaa 336  Q
    ||||| |||| ||||||||||||||    
T  5108508 aaactgctaattttggttaccttaa 5108532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 218 - 337
Target Start/End: Original strand, 8213025 - 8213143
Alignment:
Q  218 ataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaaaacta 317  Q
    ||||| ||||||||||| ||||| |||| || |||||||||||||||| |||| | ||||| ||||| ||||||||||| |||||||  ||||||| |||    
T  8213025 ataaaagaacaaaaataaaaattctatgttgaaaaatgataaaaaataatcaaatcaacttgtaaaa-gtttataaattattgtttctgatgtaaagcta 8213123  T
Q  318 ctaactttggttaccttaac 337  Q
    |||| |||||||||||||||    
T  8213124 ctaattttggttaccttaac 8213143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 301
Target Start/End: Complemental strand, 41530510 - 41530402
Alignment:
Q  193 ctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttata 292  Q
    |||||||||||  || ||  |||||||||| |||  |||||||||||||| || || ||||||||||||||  ||||||| |||||||||||||||||||    
T  41530510 ctaaccattgcctttaaggcattggataaaggaatgaaaatagaaattttgtgttgcaaaatgataaaaaacggtcaagtcaacttataaaaagtttata 41530411  T
Q  293 aattgttgt 301  Q
    |||||||||    
T  41530410 aattgttgt 41530402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 186 - 341
Target Start/End: Complemental strand, 24397610 - 24397457
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaa 285  Q
    ||||||||||| |||||| |||| |  |||| ||||| |||||||| || ||||||| || || ||||||||||||| |||||  || ||||| ||||||    
T  24397610 ggaaatgctaatcattgcccttggggcattgaataaaggaacaaaa-ta-aaattttgtgttgaaaaatgataaaaagtagtcgcgtcaacttgtaaaaa 24397513  T
Q  286 gtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccatt 341  Q
    ||||||||||| |||||| |||| |||| | ||||| ||||||||||||| |||||    
T  24397512 gtttataaattattgttttcaatctaaagccactaattttggttaccttatccatt 24397457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 19804518 - 19804577
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagt 272  Q
    |||| ||||| ||||||||||||||||||| || || ||| ||||||||||| |||||||    
T  19804518 attgaataaaggaacaaaaatagaaattttgtgttgaaaagtgataaaaaatggtcaagt 19804577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Original strand, 19804581 - 19804617
Alignment:
Q  305 caatgtaaaactactaactttggttaccttaaccatt 341  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  19804581 caatgtaaaactactaattttagttaccttaaccatt 19804617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 188 - 342
Target Start/End: Complemental strand, 3408320 - 3408166
Alignment:
Q  188 aaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagt 287  Q
    |||||||||||||||| |||| || |||| ||||| ||||||||||||||||||| || || ||||||||||||| ||||||||| ||||| ||||||||    
T  3408320 aaatgctaaccattgctcttgggacattgaataaaagaacaaaaatagaaattttgtgttgaaaaatgataaaaagtagtcaagtcaacttgtaaaaagt 3408221  T
Q  288 ttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattg 342  Q
    | |||||||||||||||||||||||| ||||||| ||||| ||||||||||||||    
T  3408220 taataaattgttgtttccaatgtaaagctactaattttggctaccttaaccattg 3408166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 186 - 343
Target Start/End: Complemental strand, 44207767 - 44207609
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaa-tgataaaaaatagtcaagttaacttataaaa 284  Q
    |||||||||||||||||| |||| |  |||||||||| ||||||||||||||||||| || ||||||| ||||||||| ||||||||| ||||| |||||    
T  44207767 ggaaatgctaaccattgcccttgtggcattggataaaggaacaaaaatagaaattttgtgttggaaaaatgataaaaagtagtcaagtcaacttgtaaaa 44207668  T
Q  285 agtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgc 343  Q
      |||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  44207667 tttttataaattgttgtttccaatataaagctactaattttggttaccttaaccattgc 44207609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 213 - 344
Target Start/End: Complemental strand, 39321276 - 39321143
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaa--tagtcaagttaacttataaaaagtttataaattgttgtttccaatgt 310  Q
    |||||||||| ||||||||||| ||||||| || |||||||||||||||||  ||||||| | ||||| |||||||||||||||||||||||||||||||    
T  39321276 attggataaaggaacaaaaatataaattttgtgttggaaaatgataaaaaaaatagtcaaatcaacttgtaaaaagtttataaattgttgtttccaatgt 39321177  T
Q  311 aaaactactaactttggttaccttaaccattgcc 344  Q
    ||| ||||||| ||||||||||||||||||||||    
T  39321176 aaagctactaattttggttaccttaaccattgcc 39321143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 192 - 344
Target Start/End: Original strand, 16492005 - 16492157
Alignment:
Q  192 gctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttat 291  Q
    |||||||||||| |||  |  |||||||||| |||||||| |||||||||| || | |||||||||||||| ||||||||| ||||| ||||||||||||    
T  16492005 gctaaccattgcccttagggcattggataaaggaacaaaactagaaattttgtgttagaaaatgataaaaagtagtcaagtcaacttgtaaaaagtttat 16492104  T
Q  292 aaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgcc 344  Q
    ||||||||||||||||||||||  |||||| || ||||||||||| |||||||    
T  16492105 aaattgttgtttccaatgtaaagttactaatttcggttaccttaatcattgcc 16492157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 205 - 341
Target Start/End: Complemental strand, 5787371 - 5787235
Alignment:
Q  205 cttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttc 304  Q
    |||| ||||||||||| | ||||||||||| ||| |||||| |||||| ||||||||| | ||||||| | ||||||||||||||| ||||| ||||||     
T  5787371 cttgtgatattggatagaggaacaaaaataaaaaatttatgttggaaagtgataaaaagtggtcaagtcatcttataaaaagtttacaaattattgtttt 5787272  T
Q  305 caatgtaaaactactaactttggttaccttaaccatt 341  Q
    ||||||||||||| ||| ||||||||| |||||||||    
T  5787271 caatgtaaaactattaattttggttacattaaccatt 5787235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 232 - 337
Target Start/End: Original strand, 45174517 - 45174622
Alignment:
Q  232 atagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaaaactactaactttggttac 331  Q
    ||||||||||| || || ||||||||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||     
T  45174517 atagaaattttgtgttgaaaaatgataaaaattggtcaagtcaacttgtaaaaagtttataaattgttgtttccaatgtaaaactattaattttggttat 45174616  T
Q  332 cttaac 337  Q
    ||||||    
T  45174617 cttaac 45174622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 321
Target Start/End: Original strand, 675087 - 675221
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaa 285  Q
    |||||||||||||||||| |||  |  |||||||||| ||| ||||||||||||||| || |||||||| ||||||| | ||||| | ||||  ||||||    
T  675087 ggaaatgctaaccattgccctttgggcattggataaa-gaaaaaaaatagaaattttgtgttggaaaataataaaaagtggtcaaatcaactagtaaaaa 675185  T
Q  286 gtttataaattgttgtttccaatgtaaaactactaa 321  Q
    |||||||||||||||||| ||||||||| |||||||    
T  675186 gtttataaattgttgttttcaatgtaaagctactaa 675221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 344
Target Start/End: Complemental strand, 10981047 - 10980916
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    ||||||||||  |||||||||  |||| || || |||||||||||||||| || |||||| ||||| ||||||||||||||||| |||||| ||||||||    
T  10981047 attggataaagaaacaaaaatgaaaatgttgtgttggaaaatgataaaaagtactcaagtcaacttgtaaaaagtttataaattattgttttcaatgtaa 10980948  T
Q  313 aactactaactttggttaccttaaccattgcc 344  Q
    |  |||||| |||||||  |||||||||||||    
T  10980947 agatactaattttggttgtcttaaccattgcc 10980916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 213 - 344
Target Start/End: Complemental strand, 36856649 - 36856518
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    |||||||||| ||||||||||||||||| | |  | |||| ||||||||| |  |||||| ||||| ||||||||||| |||| |||||||||||| |||    
T  36856649 attggataaaggaacaaaaatagaaattgtgtattagaaagtgataaaaagtgatcaagtcaacttgtaaaaagtttacaaatagttgtttccaatataa 36856550  T
Q  313 aactactaactttggttaccttaaccattgcc 344  Q
    |  |||||| |||||||||||||| |||||||    
T  36856549 agttactaattttggttaccttaatcattgcc 36856518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 228 - 337
Target Start/End: Original strand, 35729451 - 35729560
Alignment:
Q  228 aaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaaaactactaactttgg 327  Q
    ||||||||||||| | || || ||| ||||||||| | || |||| ||||| |||||| |||||||||| |||||||||||||||||||||||| |||||    
T  35729451 aaaaatagaaattgtgtgttgaaaagtgataaaaagtggttaagtcaacttgtaaaaaatttataaattattgtttccaatgtaaaactactaattttgg 35729550  T
Q  328 ttaccttaac 337  Q
    |||| |||||    
T  35729551 ttactttaac 35729560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 24620849 - 24620778
Alignment:
Q  228 aaaaatagaaattttatgctggaaaatgataa-aaaatagtcaagttaacttataaaaagtttataaattgt 298  Q
    ||||||| |||||||||| | ||||||||||| |||||  |||||| ||||| |||||| ||||||||||||    
T  24620849 aaaaataaaaattttatgttagaaaatgataaaaaaattatcaagtcaacttgtaaaaattttataaattgt 24620778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 7322934 - 7322984
Alignment:
Q  189 aatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaat 239  Q
    ||||||||||||||| |||||||||||||||||  | | ||||||||||||    
T  7322934 aatgctaaccattgcccttgagatattggataagaggataaaaatagaaat 7322984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 34111906 - 34111966
Alignment:
Q  282 aaaagtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattg 342  Q
    ||||||||| |||||||  ||| ||||| ||||||||||  ||||||| ||||||||||||    
T  34111906 aaaagtttaaaaattgtaattttcaatgcaaaactactatttttggtttccttaaccattg 34111966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 188 - 344
Target Start/End: Original strand, 39873296 - 39873453
Alignment:
Q  188 aaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagt 287  Q
    ||||| ||||||||||  ||||| ||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||| |||||| |    
T  39873296 aaatgttaaccattgcctttgaggtattgaataaaggaacaaaaatagaaattttatgttggaaaatgataaaaagtagtcaagtcaacttgtaaaaaat 39873395  T
Q  288 ttataaattgttgtttccaatg-taaaactactaactttggttaccttaaccattgcc 344  Q
    |||||||||||||||||||||| |||||||| ||| |||||||||||||| |||||||    
T  39873396 ttataaattgttgtttccaatgttaaaactattaattttggttaccttaatcattgcc 39873453  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 189 - 344
Target Start/End: Original strand, 37275239 - 37275394
Alignment:
Q  189 aatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtt 288  Q
    ||||||||||||||| ||| ||  |||||||||| | ||||||||||||||||| |  |||||||||||||||||| ||||||  |||||||||||||||    
T  37275239 aatgctaaccattgcccttcaggcattggataaaggtacaaaaatagaaattttgtattggaaaatgataaaaaatggtcaagacaacttataaaaagtt 37275338  T
Q  289 tataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgcc 344  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||    
T  37275339 tataaattgttgtttccaatgtaaaactaataattttgattaccttaagcattgcc 37275394  T

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Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 186 - 344
Target Start/End: Complemental strand, 48034032 - 48033874
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaa 285  Q
    ||||||||||| |||||| |||| |  ||| |||||| ||||||||||||||||||| || ||||||| ||  |||| | ||||||  ||||| ||||||    
T  48034032 ggaaatgctaatcattgcccttggggcattagataaaggaacaaaaatagaaattttgtgttggaaaaagaagaaaagtggtcaagccaacttgtaaaaa 48033933  T
Q  286 gtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgcc 344  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  48033932 gtttataaattgttgtttccaatgtaaagctactaattttggttaccttaaccattgcc 48033874  T

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Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 186 - 344
Target Start/End: Complemental strand, 26060324 - 26060163
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaata----gtcaagttaacttata 281  Q
    |||||||||||||||||| ||||    |||||||||   || ||||||||||||||||||||| |||||||||||||| |    ||||| | ||||| ||    
T  26060324 ggaaatgctaaccattgcccttggagcattggataaga-aataaaaatagaaattttatgctgaaaaatgataaaaaaaaagtggtcaaatcaacttgta 26060226  T
Q  282 aaaagtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgcc 344  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26060225 aaaagtttataaattgttgtttccaatgtaaaactactaattttggttaccttaaccattgcc 26060163  T

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Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 213 - 340
Target Start/End: Original strand, 2351225 - 2351352
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    ||||||||||  |||||||||| ||||||| || || ||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||    
T  2351225 attggataaagaaacaaaaataaaaattttgtgttgaaaaatgataaaaaatggtcaagtcaacttataaaaagtttacaaattgttgtttccaatgtaa 2351324  T
Q  313 aactactaactttggttaccttaaccat 340  Q
    | ||| ||| ||||||||||||||||||    
T  2351325 acctattaattttggttaccttaaccat 2351352  T

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Target: chr1; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 188 - 331
Target Start/End: Original strand, 38680884 - 38681027
Alignment:
Q  188 aaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagt 287  Q
    |||||||||||||||| |||| |  |||||||||| |||||  |||| ||||||| || |||||||| ||||||||| |||||||||| || |||||| |    
T  38680884 aaatgctaaccattgctcttggggcattggataaaggaacatcaataaaaattttgtgttggaaaataataaaaaattgtcaagttaatttgtaaaaaat 38680983  T
Q  288 ttataaattgttgtttccaatgtaaaactactaactttggttac 331  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  38680984 ttataaattgttgtttccaatgtaaaactaataattttggttac 38681027  T

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Target: chr1; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 186 - 342
Target Start/End: Original strand, 3077022 - 3077177
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaa 285  Q
    |||||||||||| ||||   ||||| ||||||||||| ||| ||||||||||||||| || |||||||| ||||||| | ||||| ||||||| ||||||    
T  3077022 ggaaatgctaactattgtttttgag-tattggataaaggaataaaaatagaaattttgtgttggaaaataataaaaagtggtcaaattaacttgtaaaaa 3077120  T
Q  286 gtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattg 342  Q
     |||||||||| |||||| |||||||||  |||||| ||| ||||||||||||||||    
T  3077121 atttataaattattgtttacaatgtaaagttactaattttagttaccttaaccattg 3077177  T

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Target: chr1; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 213 - 337
Target Start/End: Complemental strand, 30111874 - 30111750
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    |||||||||  ||||||||||| ||||||| ||  ||||||||||||||| | ||||||| |||||||||||| |||| ||||||||||||| ||| |||    
T  30111874 attggataagggaacaaaaatacaaattttgtgtcggaaaatgataaaaagtggtcaagtcaacttataaaaaatttacaaattgttgtttctaatataa 30111775  T
Q  313 aactactaactttggttaccttaac 337  Q
    ||||||||| |||||||||||||||    
T  30111774 aactactaattttggttaccttaac 30111750  T

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Target: chr1; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 213 - 342
Target Start/End: Complemental strand, 4551169 - 4551040
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    |||||||||  ||||||||||||||||||| || ||||||||||| |||| | |||||||  |||| |||||||||||||||||||||||| | ||||||    
T  4551169 attggataatggaacaaaaatagaaattttgtgttggaaaatgatgaaaagtggtcaagtcgacttgtaaaaagtttataaattgttgtttacgatgtaa 4551070  T
Q  313 aactactaactttggttaccttaaccattg 342  Q
    | ||| ||| ||||||||||||||| ||||    
T  4551069 agctattaattttggttaccttaactattg 4551040  T

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Target: chr1; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 186 - 321
Target Start/End: Original strand, 12482352 - 12482486
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaa 285  Q
    ||||||||||||||| ||  ||| ||||||||||||| ||||||||||| ||||||| || |||||||||||||||| |  |||| | ||||| ||||||    
T  12482352 ggaaatgctaaccatggcttttgggatattggataaaggaacaaaaataaaaattttgtgttggaaaatgataaaaagtgatcaaatcaacttgtaaaaa 12482451  T
Q  286 gtttataaattgttgtttccaatgtaaaactactaa 321  Q
    ||||| ||||||||||||  ||||||||||||||||    
T  12482452 gttta-aaattgttgtttttaatgtaaaactactaa 12482486  T

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Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 188 - 342
Target Start/End: Original strand, 15177001 - 15177155
Alignment:
Q  188 aaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagt 287  Q
    ||||| ||| |||||| ||||||  ||||||||||  |||||||||| ||||||| || || | ||||||||||||| || |||||||||| |||||| |    
T  15177001 aaatgttaatcattgcccttgaggcattggataaagaaacaaaaataaaaattttgtgttgaacaatgataaaaaatggttaagttaacttgtaaaaaat 15177100  T
Q  288 ttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattg 342  Q
    |||||||| ||||||| |||| || ||||| ||| ||| ||||||||||||||||    
T  15177101 ttataaatcgttgttttcaatatataactattaattttagttaccttaaccattg 15177155  T

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Target: chr1; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 341
Target Start/End: Complemental strand, 21029389 - 21029295
Alignment:
Q  247 tggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccatt 341  Q
    |||||| ||||||||| |  |||||| ||||||||||| ||||||||||| |||||| ||||||||||||||||| ||| |||||||||| ||||    
T  21029389 tggaaagtgataaaaagttatcaagtcaacttataaaatgtttataaattattgttttcaatgtaaaactactaatttttgttaccttaaacatt 21029295  T

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Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 4081206 - 4081307
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    ||||||||||  |||||||||||||||| | || |||||| |||| |||| | ||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  4081206 attggataaagaaacaaaaatagaaattatgtgttggaaagtgatgaaaagtggtcaagtaaatttataaaaagtttttaaattgttatttccaatgtaa 4081305  T
Q  313 aa 314  Q
    ||    
T  4081306 aa 4081307  T

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Target: chr1; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 32512167 - 32512083
Alignment:
Q  219 taaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttt 303  Q
    |||| ||||||||||||||||||| || |||||||||||||||| |  |||||| ||||| |||||| |||||||||||||||||    
T  32512167 taaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtgatcaagtcaacttgtaaaaattttataaattgttgttt 32512083  T

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Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 345
Target Start/End: Original strand, 16109859 - 16109946
Alignment:
Q  258 aaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgcct 345  Q
    ||||||||||||| | ||||| ||||||||||| || ||||| ||| ||||||||| ||||||| | || |||| |||||||||||||    
T  16109859 aaaaaatagtcaaatcaacttgtaaaaagtttacaagttgttattttcaatgtaaagctactaattgtgtttactttaaccattgcct 16109946  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 336
Target Start/End: Complemental strand, 8904072 - 8903951
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    |||||||| ||||||||||||| ||||||| || || ||||||||| |||||| | || | ||||| |||||| || ||||||| |||||| |||| |||    
T  8904072 attggatatatgaacaaaaataaaaattttgtgttgaaaaatgata-aaaataat-aaatcaacttgtaaaaaattaataaattattgttttcaatataa 8903975  T
Q  313 aactactaactttggttaccttaa 336  Q
    | ||| ||| ||| ||||||||||    
T  8903974 agctattaatttttgttaccttaa 8903951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 337
Target Start/End: Complemental strand, 46065407 - 46065316
Alignment:
Q  247 tggaaaatgataaaaaatagtcaagt-taacttataaaaagtttataaattgttgtttccaatgtaaaactactaactttggttaccttaac 337  Q
    ||||||||| ||||||||  || ||| |||||| |||||| |||| |||| |||||||||||| |||| ||| |||  ||||||||||||||    
T  46065407 tggaaaatggtaaaaaatgatcgagtctaacttgtaaaaaatttaaaaatcgttgtttccaatataaagctattaatcttggttaccttaac 46065316  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 22416674 - 22416716
Alignment:
Q  287 tttataaattgttgtttccaatgtaaaactactaactttggtt 329  Q
    ||||||||||||||||||||||| ||||||||||  |||||||    
T  22416674 tttataaattgttgtttccaatgcaaaactactacttttggtt 22416716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 186 - 336
Target Start/End: Original strand, 46055751 - 46055901
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaa 285  Q
    |||||||||||||||||| ||||    |||||||||| ||||||||||||||||||| || |||||||||||||||| ||||||||| ||||| ||||||    
T  46055751 ggaaatgctaaccattgcccttggagcattggataaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtagtcaagtcaacttgtaaaaa 46055850  T
Q  286 gtttataaattgttgtttccaatgtaaaactactaactttggttaccttaa 336  Q
    ||| ||||||||||||||  |||||||||||||||| ||||||||||||||    
T  46055851 gttaataaattgttgtttttaatgtaaaactactaattttggttaccttaa 46055901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 198 - 343
Target Start/End: Complemental strand, 38611477 - 38611332
Alignment:
Q  198 cattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattg 297  Q
    |||||| |||| || |||||||||| ||| ||||||||||||||| || |||||||||||| ||| | ||||||| ||||| ||||||||||||||||||    
T  38611477 cattgcccttgggacattggataaaggaagaaaaatagaaattttgtgttggaaaatgatagaaagttgtcaagtcaacttgtaaaaagtttataaattg 38611378  T
Q  298 ttgtttccaatgtaaaactactaactttggttaccttaaccattgc 343  Q
    ||||||||||| |||| ||||||| ||| |||||||||||||||||    
T  38611377 ttgtttccaatataaagctactaattttagttaccttaaccattgc 38611332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 226 - 340
Target Start/End: Original strand, 38014655 - 38014769
Alignment:
Q  226 acaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaaaactactaacttt 325  Q
    ||||||||| ||||||| || |||||||||||||||| | ||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |||    
T  38014655 acaaaaatataaattttgtgttggaaaatgataaaaagtggtcaagtcaacttataaaaagtttataaatcgttgtttccaatgtaaagctactaatttt 38014754  T
Q  326 ggttaccttaaccat 340  Q
    | |||||||||||||    
T  38014755 gattaccttaaccat 38014769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 186 - 344
Target Start/End: Complemental strand, 20499463 - 20499306
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaa 285  Q
    ||||||||||| |||||| ||||  | |||||||||| ||||||||||||||||||| || || |||| |||||||| || |||||| || |||||||||    
T  20499463 ggaaatgctaatcattgctcttggaacattggataaaggaacaaaaatagaaattttgtgttg-aaaacgataaaaagtaatcaagtcaatttataaaaa 20499365  T
Q  286 gtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgcc 344  Q
    ||||||||||| || |||  ||| |||||||| ||| ||||||||| ||||||||||||    
T  20499364 gtttataaattattatttttaatataaaactattaattttggttactttaaccattgcc 20499306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 214 - 330
Target Start/End: Original strand, 36473310 - 36473426
Alignment:
Q  214 ttggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaaa 313  Q
    ||||||||| ||||||||||||||| ||| || || ||||||||||||| | ||||||| ||| | |||||||||||||||||||| ||| ||||| |||    
T  36473310 ttggataaaggaacaaaaatagaaaatttgtgttgaaaaatgataaaaagtggtcaagtcaacgtgtaaaaagtttataaattgttattttcaatgcaaa 36473409  T
Q  314 actactaactttggtta 330  Q
     ||||||| ||||||||    
T  36473410 gctactaattttggtta 36473426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 331
Target Start/End: Original strand, 32734520 - 32734623
Alignment:
Q  228 aaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaaaactactaactttgg 327  Q
    |||||||| ||| ||||| || ||| || |||||||| ||||||| ||||| ||||||| ||| |||||||||||||||||  ||| ||||||| ||| |    
T  32734520 aaaaatagcaatattatgttgaaaagtggtaaaaaatggtcaagtcaacttctaaaaaggttagaaattgttgtttccaatacaaagctactaattttag 32734619  T
Q  328 ttac 331  Q
    ||||    
T  32734620 ttac 32734623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 52313468 - 52313553
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgtt 299  Q
    |||||||||| ||||||||||  ||||||| || |  ||||| ||||||| | ||||| | ||||||||||| ||||||||||||||    
T  52313468 attggataaaggaacaaaaatcaaaattttgtgtta-aaaatcataaaaagtggtcaaatcaacttataaaaggtttataaattgtt 52313553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 24980126 - 24980178
Alignment:
Q  285 agtttataaattgttgtttccaatgtaaaactactaactttggttaccttaac 337  Q
    |||||||||||||||||||||||  ||||  |||||| ||||||| |||||||    
T  24980126 agtttataaattgttgtttccaacataaagttactaattttggttgccttaac 24980178  T

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Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 186 - 344
Target Start/End: Original strand, 9991418 - 9991576
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaa 285  Q
    |||||||||||||||||| |||| |  ||||||||||  |||||||||||||||||| |  |||||||||||||||| ||||||| | ||||| ||||||    
T  9991418 ggaaatgctaaccattgcccttggggcattggataaagaaacaaaaatagaaattttgtattggaaaatgataaaaagtagtcaaatcaacttgtaaaaa 9991517  T
Q  286 gtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgcc 344  Q
     ||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||    
T  9991518 atttataaattgttgttttcaatgtaaaactactaattttgattaccttaaccattgcc 9991576  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 233 - 342
Target Start/End: Original strand, 3095064 - 3095173
Alignment:
Q  233 tagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaaaactactaactttggttacc 332  Q
    |||||||||| || |||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||    
T  3095064 tagaaattttgtgttggaaaatgataaaaaatagtcaaatcaacttgtaaaaagtttataaattattgtttctaatgtaaaagtactaattttggttacc 3095163  T
Q  333 ttaaccattg 342  Q
    ||||||||||    
T  3095164 ttaaccattg 3095173  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 249 - 344
Target Start/End: Complemental strand, 36402532 - 36402437
Alignment:
Q  249 gaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgcc 344  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||    
T  36402532 gaaaatgatcaaaagtagtcaagttaacttgtaaaaagtttataaattgttgtttccaatataaaactactaattttggttaccttaatcattgcc 36402437  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 343
Target Start/End: Original strand, 32354707 - 32354864
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaa 285  Q
    |||||||||||||||||  | || | ||||||||||| ||||||||||| ||| ||  || || ||||||||||||| | ||||||| ||||| ||||||    
T  32354707 ggaaatgctaaccattgttcatggggtattggataaaggaacaaaaataaaaaattcctgttgaaaaatgataaaaagtggtcaagtcaacttgtaaaaa 32354806  T
Q  286 gtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattgc 343  Q
    ||||||||||| || ||| |||||||||| |||||| ||||||||||||||| |||||    
T  32354807 gtttataaattattatttacaatgtaaaattactaattttggttaccttaactattgc 32354864  T

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Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 213 - 345
Target Start/End: Complemental strand, 41464389 - 41464257
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    |||| ||||| ||| ||||||||||||||| |  || ||||| |||||||   ||||||| ||||| |||||||||||||||||||||||||||||||||    
T  41464389 attgaataaaggaataaaaatagaaattttgtattgaaaaattataaaaagcggtcaagtcaacttgtaaaaagtttataaattgttgtttccaatgtaa 41464290  T
Q  313 aactactaactttggttaccttaaccattgcct 345  Q
    |  |||||| |||||||||||||||||| ||||    
T  41464289 agatactaattttggttaccttaaccatcgcct 41464257  T

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Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 186 - 342
Target Start/End: Complemental strand, 6084838 - 6084681
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaat-agaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaa 284  Q
    |||||||||||||||||| |||  | ||||||||||| |||||||||| | ||| ||| |  || ||||||||||||| | ||||||| || || |||||    
T  6084838 ggaaatgctaaccattgcccttagggtattggataaaggaacaaaaattaaaaaatttgtattgaaaaatgataaaaagtggtcaagtcaatttgtaaaa 6084739  T
Q  285 agtttataaattgttgtttccaatgtaaaactactaactttggttaccttaaccattg 342  Q
    |||||||||| | |||||||||||||||| ||||||| ||| |||||||||| |||||    
T  6084738 agtttataaaatattgtttccaatgtaaagctactaattttagttaccttaatcattg 6084681  T

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Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 40356521 - 40356405
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    |||||||||| |||||||||| ||||||||||| |  ||||||||||||| | || || |||| || || |||||||||||||||||||||||||| |||    
T  40356521 attggataaaggaacaaaaat-gaaattttatgttaaaaaatgataaaaagtggttaaattaatttgtataaagtttataaattgttgtttccaatataa 40356423  T
Q  313 aactactaactttggtta 330  Q
    |  |||||| ||||||||    
T  40356422 agttactaattttggtta 40356405  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 186 - 279
Target Start/End: Complemental strand, 5711257 - 5711164
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaactta 279  Q
    ||||||| ||||||||||  || ||| ||| |||||| ||| ||||||| ||||||| || |||||||||||||||||| ||||||| ||||||    
T  5711257 ggaaatgttaaccattgcctttaagacattagataaaggaataaaaataaaaattttgtgttggaaaatgataaaaaattgtcaagtcaactta 5711164  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 18904305 - 18904248
Alignment:
Q  228 aaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaa 285  Q
    ||||||||||||||| || |||||||||||||||| |||| |||| ||||| ||||||    
T  18904305 aaaaatagaaattttgtgttggaaaatgataaaaagtagttaagtcaacttgtaaaaa 18904248  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 39085772 - 39085846
Alignment:
Q  188 aaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaa 262  Q
    |||||||||||||||| |||| || |||||||||| | | |||||||||||| | |   ||||||||||||||||    
T  39085772 aaatgctaaccattgctcttgggacattggataaagggataaaaatagaaatataacattggaaaatgataaaaa 39085846  T

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Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 186 - 339
Target Start/End: Complemental strand, 22616997 - 22616846
Alignment:
Q  186 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaa 285  Q
    ||||||||||| |||||  |||| |  ||||||||||  |||||||||||||||| | |  |||||||||||||||| ||||||| | ||||||||||||    
T  22616997 ggaaatgctaatcattgtccttggggcattggataaaataacaaaaatagaaattgtgt--tggaaaatgataaaaagtagtcaaatcaacttataaaaa 22616900  T
Q  286 gtttataaattgttgtttccaatgtaaaactactaactttggttaccttaacca 339  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  22616899 gtttataaattgttgtttccaatgtaaaactactcattttggttaccttaacca 22616846  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 213 - 336
Target Start/End: Original strand, 6614884 - 6615007
Alignment:
Q  213 attggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgtaa 312  Q
    |||||||||| ||||||||||||||||||| || |||||||||||||||| | ||||| | ||||| ||||||||||||||||| ||||||| | |||||    
T  6614884 attggataaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtggtcaaatcaacttgtaaaaagtttataaattattgtttctagtgtaa 6614983  T
Q  313 aactactaactttggttaccttaa 336  Q
    ||||||||| ||| ||||||||||    
T  6614984 aactactaattttagttaccttaa 6615007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 337
Target Start/End: Complemental strand, 31765899 - 31765774
Alignment:
Q  212 tattggataaatgaacaaaaatagaaattttatgctggaaaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtttccaatgta 311  Q
    ||||||||||  ||| ||||||||||||| | || |||| | | ||||||||| ||||| | ||||| |||||||||||  |||| |||||| |||||||    
T  31765899 tattggataagggaataaaaatagaaattctgtgttggagagtaataaaaaatggtcaaatcaacttgtaaaaagtttacgaattattgttttcaatgta 31765800  T
Q  312 aaactactaactttggttaccttaac 337  Q
    |||||||||| |||| ||||||||||    
T  31765799 aaactactaattttgattaccttaac 31765774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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