View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11149_high_19 (Length: 240)
Name: NF11149_high_19
Description: NF11149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11149_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2441255 - 2441476
Alignment:
| Q |
1 |
atgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaaccacacgctatcttcactgcgtaagctac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2441255 |
atgcttctgcaagtcatggaattctttaatcaccgatcacaaattcgccaagaagcacctcagcttgtcaaccacacgctgccttcactgcgtaagctac |
2441354 |
T |
|
| Q |
101 |
actgggttcccctatctgtacgttctcaagtcttacccactcgggcccgttctcaacaacttaaccaccaacatcacagagtatgagtattctccgtata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2441355 |
actgggttcccctatctgtacgttctcaagtcttacccactcgggcccgttctcaacaacttaaccaccaacatcacagagtatgagtattctccgtata |
2441454 |
T |
|
| Q |
201 |
atattcatggagatcatcctag |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2441455 |
atattcatggagatcatcctag |
2441476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 988688 - 988757
Alignment:
| Q |
8 |
tgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaaccacac |
77 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||||| | || |||||||| ||| |||||||||||| |
|
|
| T |
988688 |
tgcaagtcatggaattctttaatctctgatcccaaattcgcaaaaaagcaccttagcctgtcaaccacac |
988757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 2697531 - 2697457
Alignment:
| Q |
1 |
atgcttctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaaccac |
75 |
Q |
| |
|
|||| |||| ||||||||||||||| ||||||| ||| || || |||||||||||||| ||| |||||||||| |
|
|
| T |
2697531 |
atgcgtctgtaagtcatggaattctctaatcactgataccagttttaccaagaagcaccttagcatgtcaaccac |
2697457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 22672917 - 22672849
Alignment:
| Q |
7 |
ctgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaaccac |
75 |
Q |
| |
|
||||||||||||||||||| ||||| | |||| ||||||| | ||||||||||| ||| |||||||||| |
|
|
| T |
22672917 |
ctgcaagtcatggaattctctaatctctgatcgcaaattcgctaagaagcaccttagcctgtcaaccac |
22672849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 1428531 - 1428462
Alignment:
| Q |
8 |
tgcaagtcatggaattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaaccacac |
77 |
Q |
| |
|
|||||| |||| |||||| ||||||| |||| ||||||| |||||||||| || ||| |||||||||||| |
|
|
| T |
1428531 |
tgcaaggcatgtaattctctaatcactgatctcaaattcgccaagaagcaacttagcatgtcaaccacac |
1428462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 20305160 - 20305212
Alignment:
| Q |
20 |
aattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaac |
72 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
20305160 |
aattctctaatcaccgatcccaaattcgccaagaagcaccttcgcttgtcaac |
20305212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 20309564 - 20309616
Alignment:
| Q |
20 |
aattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaac |
72 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
20309564 |
aattctctaatcaccgatcccaaattcgccaagaagcaccttcgcttgtcaac |
20309616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 20292300 - 20292352
Alignment:
| Q |
20 |
aattctttaatcaccgatcacaaattcaccaagaagcacctcagcttgtcaac |
72 |
Q |
| |
|
|||||| |||||||| ||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
20292300 |
aattctctaatcaccaatcccaaattcgccaagaagcaccttcgcttgtcaac |
20292352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University