View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11149_high_2 (Length: 915)

Name: NF11149_high_2
Description: NF11149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11149_high_2
NF11149_high_2
[»] chr2 (20 HSPs)
chr2 (14-797)||(23875689-23876471)
chr2 (374-797)||(6085317-6085750)
chr2 (109-320)||(26364290-26364501)
chr2 (827-897)||(23875589-23875659)
chr2 (827-896)||(6085218-6085287)
chr2 (14-83)||(26364594-26364663)
chr2 (370-476)||(24383009-24383116)
chr2 (374-422)||(36390956-36391004)
chr2 (375-437)||(6084871-6084933)
chr2 (374-448)||(20991994-20992068)
chr2 (374-444)||(34617652-34617722)
chr2 (380-437)||(23875245-23875302)
chr2 (374-422)||(7868142-7868190)
chr2 (375-428)||(8145386-8145439)
chr2 (375-437)||(2307059-2307121)
chr2 (389-463)||(30545395-30545469)
chr2 (380-422)||(36391673-36391715)
chr2 (380-421)||(15602822-15602863)
chr2 (381-434)||(41519914-41519967)
chr2 (375-448)||(44094792-44094865)
[»] chr3 (17 HSPs)
chr3 (374-797)||(49160986-49161409)
chr3 (109-320)||(41238955-41239166)
chr3 (164-320)||(5398524-5398676)
chr3 (827-897)||(49161439-49161509)
chr3 (14-83)||(41238793-41238862)
chr3 (14-83)||(5398369-5398440)
chr3 (373-437)||(49161794-49161858)
chr3 (374-428)||(33455776-33455830)
chr3 (375-448)||(43768734-43768807)
chr3 (373-422)||(51421676-51421725)
chr3 (375-421)||(33968181-33968227)
chr3 (374-428)||(44021285-44021338)
chr3 (375-437)||(45297549-45297611)
chr3 (374-422)||(8652809-8652857)
chr3 (374-428)||(33454865-33454919)
chr3 (382-428)||(43768033-43768079)
chr3 (380-422)||(45501295-45501337)
[»] chr5 (15 HSPs)
chr5 (384-797)||(42651204-42651618)
chr5 (827-897)||(42651104-42651174)
chr5 (376-422)||(4789521-4789567)
chr5 (372-422)||(6804888-6804938)
chr5 (374-448)||(9923387-9923461)
chr5 (374-468)||(4790173-4790266)
chr5 (376-422)||(26712389-26712435)
chr5 (376-422)||(26982127-26982173)
chr5 (375-437)||(42650757-42650819)
chr5 (374-422)||(4555461-4555509)
chr5 (375-422)||(32944485-32944532)
chr5 (374-448)||(1969778-1969852)
chr5 (382-428)||(1970509-1970555)
chr5 (375-428)||(12201377-12201430)
chr5 (375-444)||(35262452-35262521)
[»] chr7 (15 HSPs)
chr7 (375-749)||(36844612-36844997)
chr7 (374-444)||(24995851-24995921)
chr7 (381-444)||(24996662-24996725)
chr7 (374-428)||(29060734-29060788)
chr7 (374-422)||(42607080-42607128)
chr7 (373-428)||(40320405-40320460)
chr7 (375-437)||(32871126-32871188)
chr7 (381-422)||(40257803-40257844)
chr7 (374-418)||(6730162-6730206)
chr7 (375-443)||(36845182-36845250)
chr7 (375-422)||(32548674-32548721)
chr7 (388-422)||(27599224-27599258)
chr7 (388-422)||(27600096-27600130)
chr7 (373-422)||(43846917-43846965)
chr7 (375-416)||(44540988-44541029)
[»] chr8 (10 HSPs)
chr8 (375-462)||(27322548-27322635)
chr8 (375-463)||(35840490-35840578)
chr8 (373-437)||(35943074-35943138)
chr8 (374-448)||(42346080-42346154)
chr8 (374-422)||(40450987-40451035)
chr8 (374-416)||(27321598-27321640)
chr8 (375-422)||(37562295-37562342)
chr8 (374-420)||(6012968-6013014)
chr8 (375-433)||(35839722-35839780)
chr8 (382-428)||(42345401-42345447)
[»] chr4 (18 HSPs)
chr4 (375-422)||(25970106-25970153)
chr4 (373-428)||(39429932-39429987)
chr4 (374-428)||(41261885-41261939)
chr4 (375-422)||(232050-232097)
chr4 (382-445)||(36450735-36450798)
chr4 (374-448)||(34154793-34154867)
chr4 (374-428)||(36013947-36014001)
chr4 (373-422)||(33370876-33370925)
chr4 (376-445)||(36451405-36451474)
chr4 (374-422)||(23383309-23383357)
chr4 (374-422)||(33369908-33369956)
chr4 (374-437)||(34155612-34155675)
chr4 (374-445)||(41261121-41261192)
chr4 (374-448)||(22061329-22061403)
chr4 (388-442)||(34371475-34371529)
chr4 (375-428)||(47326784-47326837)
chr4 (375-428)||(47341580-47341633)
chr4 (389-422)||(47377599-47377632)
[»] chr1 (13 HSPs)
chr1 (373-428)||(48835092-48835147)
chr1 (374-422)||(38931313-38931361)
chr1 (374-445)||(47334198-47334269)
chr1 (380-422)||(30466187-30466229)
chr1 (373-421)||(2687729-2687777)
chr1 (370-422)||(4641763-4641815)
chr1 (375-463)||(49420084-49420172)
chr1 (375-422)||(4640528-4640575)
chr1 (373-428)||(45922230-45922285)
chr1 (382-445)||(47334878-47334941)
chr1 (374-421)||(50950897-50950944)
chr1 (374-428)||(34716423-34716477)
chr1 (374-448)||(42383719-42383792)
[»] scaffold0150 (1 HSPs)
scaffold0150 (375-417)||(14012-14054)
[»] chr6 (6 HSPs)
chr6 (375-417)||(8384024-8384066)
chr6 (375-422)||(29290123-29290170)
chr6 (375-421)||(25371169-25371215)
chr6 (374-448)||(28975339-28975413)
chr6 (375-428)||(16764925-16764978)
chr6 (389-422)||(24125986-24126019)
[»] scaffold2003 (1 HSPs)
scaffold2003 (374-422)||(532-580)
[»] scaffold0129 (1 HSPs)
scaffold0129 (375-422)||(43219-43266)


Alignment Details
Target: chr2 (Bit Score: 661; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 14 - 797
Target Start/End: Complemental strand, 23876471 - 23875689
Alignment:
Q  14 atggacatcaatcaaatcaagagtttttatttcagatctgcagtttataggtctaatttggaataagaaatgttctttcagaaagggtnnnnnnn-catg 112  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||        ||||    
T  23876471 atggacatcgatcaaatcaagagtttttatttcagatctggagtttataggtctaatttggaataagaaacgttctttcagaaagggtaaaaaaaacatg 23876372  T
Q  113 tggattttatgtgaaaaatgtgaaacaagatgttgagtttgaagaagatgagatgttgaagaagatgcttgtttgtatattttttctgggtaagttgaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23876371 tggattttatgtgaaaaatgtgaaacaagatgttgagtttgaagaagatgagatgttgaagaagatgcttgtttgtatattttttctgggtaagttggaa 23876272  T
Q  213 agaaatcagttatggaaagaaagaaatgagatgagagtgatgagacaatactgaagtaaatgggaggtgcactggaagaaacaaaaaacattaaaattct 312  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23876271 agaaatcagttatggaaagaaagaaatgaaatgagagtgatgagacaatactgaagtaaatgggaggtgcactggaagaaacaaaaaacattaaaattct 23876172  T
Q  313 attttcagnnnnnnnnnncttttctctccctagcaggttgccaactgtcacatgtcatgaaaggtggggtttagcatgggaaatgggagttgtttcccac 412  Q
    ||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23876171 attttcagttttttttt--ttttctctccctagcaggttgccaactgtcacatgtcatgaaaggtggggtttagcatgggaaatgggagttgtttcccac 23876074  T
Q  413 catgggaaagatttttatgaccattcgattaaagagatgtacatattttataatagactgcctatattatannnnnnnctttcttttcatattgtcttca 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||||||||||||    
T  23876073 catgggaaagatttttatgaccattcgattaaagagatgtacatattttataacagactgcctatattatatttttttctttcttttcatattgtcttca 23875974  T
Q  513 acccatgaatatcaaaattttacagagatctgaaatccatactttactaaagccttttcaagtaacattaataaacctaaaaacacattgattcttggcc 612  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23875973 acccatgaataccaaaattttacagagatctgaaatccatgctttactaaagccttttcaagtaacattaataaacccaaaaacacattgattcttggcc 23875874  T
Q  613 ttttttgcaagaacctaaaaacacatgtaaataaaaattaccaagtctaagaataaaaaagtgtgggaacattgatgaacaaaaaatcaagttgaagaca 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23875873 ttttttgcaagaacctaaaaacacatgtaaataaaaattaccaagtctaagaataaaaaagtgtgggaacattgatgaacaaaaaatcaagttgaagaca 23875774  T
Q  713 aacatcaaaatttgctcacggcaatgattttgattttgttttcctatgaattaacttgttttgtttttaacttaattggttcaac 797  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23875773 aacatcaaaatttgctcacggcaatgattttgattttgttttcctatgaattaacttgttttgtttttaacttaattggttcaac 23875689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 374 - 797
Target Start/End: Complemental strand, 6085750 - 6085317
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagagatgtacatattttataatagactgc 473  Q
    |||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  6085750 aggtggggtttagcatgggaaaggtgagttgtttcctaccatgggaaagatttttatgaccattcgattaaagaggtgtacatattttataatagactgt 6085651  T
Q  474 ctatattatannnnnnn-ctttcttttcatattgtcttcaacccat---------gaatatcaaaattttacagagatctgaaatccatactttactaaa 563  Q
    ||||||||||        ||||||||||||||||||||||||||||         ||||| |||||||||| ||||||||||||||||| |||||| |||    
T  6085650 ctatattatattttttttctttcttttcatattgtcttcaacccataaataccatgaataccaaaattttatagagatctgaaatccatgctttaccaaa 6085551  T
Q  564 gccttttcaagtaacattaataaacctaaaaacacattgattcttggccttttttgcaagaacctaaaaacacatgtaaataaaaattaccaagtctaag 663  Q
    |||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6085550 gcctttccaggtaacattaataaacccaaaaacacattgattcttggccttttttgcaagaacctaaaaacacatgtaaataaaaattaccaagtctaag 6085451  T
Q  664 aataaaaaagtgtgggaacattgatgaacaaaaaatcaagttgaagacaaacatcaaaatttgctcacggcaatgattttgattttgttttcctatgaat 763  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  6085450 aataaaaaagtgtggaaacattgatgaacaaaaaatcaagttgaagacaaacatcaaaatttgctcacggcaatggttttgattttgatttcctatgaat 6085351  T
Q  764 taacttgttttgtttttaacttaattggttcaac 797  Q
    ||||||||||||||||||||||||||||||||||    
T  6085350 taacttgttttgtttttaacttaattggttcaac 6085317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 109 - 320
Target Start/End: Complemental strand, 26364501 - 26364290
Alignment:
Q  109 catgtggattttatgtgaaaaatgtgaaacaagatgttgagtttgaagaagatgagatgttgaagaagatgcttgtttgtatattttttctgggtaagtt 208  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26364501 catgtggattttatgtgaaaaatgtgaaacaagatgttgagcttgaagaagatgagatgttgaagaagatgcttgttggtatattttttctgggtaagtt 26364402  T
Q  209 gaaaagaaatcagttatggaaagaaagaaatgagatgagagtgatgagacaatactgaagtaaatgggaggtgcactggaagaaacaaaaaacattaaaa 308  Q
    | ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||| |||||| ||||||||| ||    
T  26364401 ggaaagaaatcagttctggaaagaaagaaatgagatgagagtcatgagacaatactgaagtaaatggggggtgcacgggatgaaacataaaacattagaa 26364302  T
Q  309 ttctattttcag 320  Q
     |||||||||||    
T  26364301 atctattttcag 26364290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 827 - 897
Target Start/End: Complemental strand, 23875659 - 23875589
Alignment:
Q  827 tcttggtgtgtttcaagaaataattatatgatttttggattataacactctgaattgttgtctgttcatag 897  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23875659 tcttggtgtgtttcaagaaataattatatgattttcggattataacactctgaattgttgtctgttcatag 23875589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 827 - 896
Target Start/End: Complemental strand, 6085287 - 6085218
Alignment:
Q  827 tcttggtgtgtttcaagaaataattatatgatttttggattataacactctgaattgttgtctgttcata 896  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6085287 tcttgttgtgtttcaagaaataattatatgatttttggattataacactctgaattgttgtctgttcata 6085218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 26364663 - 26364594
Alignment:
Q  14 atggacatcaatcaaatcaagagtttttatttcagatctgcagtttataggtctaatttggaataagaaa 83  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26364663 atggacatcgatcaaatcaagagtttttatttcagatctgcagtttataggtctaatttggaataagaaa 26364594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 370 - 476
Target Start/End: Complemental strand, 24383116 - 24383009
Alignment:
Q  370 tgaaaggtggggtttagcatgggaaatgggagttgttt-cccaccatgggaaagatttttatgaccattcgattaaagagatgtacatattttataatag 468  Q
    ||||||||||||||||| |||||||| || |||||||| ||||||||||||||| |||||   ||||||  |||||||||  ||||  ||||||| ||||    
T  24383116 tgaaaggtggggtttagtatgggaaagggaagttgtttccccaccatgggaaagtttttttgtaccattaaattaaagaggagtactgattttatcatag 24383017  T
Q  469 actgccta 476  Q
    ||||||||    
T  24383016 actgccta 24383009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 374 - 422
Target Start/End: Original strand, 36390956 - 36391004
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||    
T  36390956 aggtggggtttagcatgggaaagggaagttgtttcccaccatgggaaag 36391004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 437
Target Start/End: Original strand, 6084871 - 6084933
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccatt 437  Q
    |||| |||||| ||||||||| |||| |||||||||| |||||||||| ||||||||||||||    
T  6084871 ggtgaggtttaacatgggaaaggggaattgtttcccatcatgggaaagttttttatgaccatt 6084933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 374 - 448
Target Start/End: Complemental strand, 20992068 - 20991994
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagag 448  Q
    |||||||||||||||||||||  | ||||||||| |||||||||||||| |||||   |||||| ||||||||||    
T  20992068 aggtggggtttagcatgggaatggagagttgttttccaccatgggaaagtttttttcaaccattagattaaagag 20991994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 374 - 444
Target Start/End: Original strand, 34617652 - 34617722
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaa 444  Q
    |||||||||||||||||||||| |  | ||||||||||||||||||||| | ||| |||||||| ||||||    
T  34617652 aggtggggtttagcatgggaaaggataattgtttcccaccatgggaaagttatttttgaccattagattaa 34617722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 380 - 437
Target Start/End: Original strand, 23875245 - 23875302
Alignment:
Q  380 ggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccatt 437  Q
    |||||||||||||||| |||| ||||||| || |||||||||| ||||||||||||||    
T  23875245 ggtttagcatgggaaaggggaattgtttcgcatcatgggaaagttttttatgaccatt 23875302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 374 - 422
Target Start/End: Complemental strand, 7868190 - 7868142
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  7868190 aggtgggatttagcatgagaaaggggagttgtttcccaccatgggaaag 7868142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 375 - 428
Target Start/End: Original strand, 8145386 - 8145439
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    |||||||||||| |||||||    ||||||||||||||||||||||||||||||    
T  8145386 ggtggggtttagaatgggaatgaagagttgtttcccaccatgggaaagattttt 8145439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 375 - 437
Target Start/End: Complemental strand, 2307121 - 2307059
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccatt 437  Q
    |||| |||||||||||||||| || |||||||| |||||||| |||||  |||| ||||||||    
T  2307121 ggtgaggtttagcatgggaaagggaagttgttttccaccatgagaaagtattttgtgaccatt 2307059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 389 - 463
Target Start/End: Complemental strand, 30545469 - 30545395
Alignment:
Q  389 tgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagagatgtacatattttat 463  Q
    ||||||| || ||||||||||||  ||||||||| ||||| | |||||| |||||||||| || ||| |||||||    
T  30545469 tgggaaagggaagttgtttcccatgatgggaaagttttttttaaccattagattaaagaggtgcacacattttat 30545395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 380 - 422
Target Start/End: Complemental strand, 36391715 - 36391673
Alignment:
Q  380 ggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||    
T  36391715 ggtttagtatgggaaaggggagttgttttccaccatgggaaag 36391673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 421
Target Start/End: Complemental strand, 15602863 - 15602822
Alignment:
Q  380 ggtttagcatgggaaatgggagttgtttcccaccatgggaaa 421  Q
    |||||||||| ||||| || ||||||||||||||||||||||    
T  15602863 ggtttagcataggaaagggaagttgtttcccaccatgggaaa 15602822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 41519967 - 41519914
Alignment:
Q  381 gtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgacc 434  Q
    |||||| |||||||| || |||| |||||||||||||||||| ||||| |||||    
T  41519967 gtttagtatgggaaagggaagttttttcccaccatgggaaagttttttttgacc 41519914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 44094865 - 44094792
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagag 448  Q
    |||||| |||||||||||||| |  ||||||||||||||||   |||| ||||| ||||||||  |||||||||    
T  44094865 ggtgggatttagcatgggaaaggaaagttgtttcccaccataaaaaagttttttttgaccattaaattaaagag 44094792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 374 - 797
Target Start/End: Original strand, 49160986 - 49161409
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagagatgtacatattttataatagactgc 473  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  49160986 aggtggggtttagcatgggaaaggggagttgtttcctaccatggaaaagatttttatgaccattcgattaaagaggtgtacatattttataatagactcc 49161085  T
Q  474 ctatattatannnnnnnctttcttttcatattgtcttcaacccatgaatatcaaaattttacagagatctgaaatccatactttactaaagccttttcaa 573  Q
    |||||||||         |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| ||     
T  49161086 ctatattatttttttctttttcttttcatattgtcttcaacccatgaataccaaaattttacagagatctgaaatccatgctttaccaaagcctttccag 49161185  T
Q  574 gtaacattaataaacctaaaaacacattgattcttggccttttttgcaagaacctaaaaacacatgtaaataaaaattaccaagtctaagaataaaaaag 673  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  49161186 ataacattaataaacccaaaaacacattgattcttggccttttttgcaagaacctaaaaacacatgtaaataaaaattaccaaatctaagaatataaaag 49161285  T
Q  674 tgtgggaacattgatgaacaaaaaatcaagttgaagacaaacatcaaaatttgctcacggcaatgattttgattttgttttcctatgaattaacttgttt 773  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  49161286 tgtgggaacattgatgaacaaaaaaccaagttgaagacaaacatcaaaatttgctcacggcaatggttttgattttgttttcctatgaattaacttgttt 49161385  T
Q  774 tgtttttaacttaattggttcaac 797  Q
    ||||||||||||||||||||||||    
T  49161386 tgtttttaacttaattggttcaac 49161409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 109 - 320
Target Start/End: Original strand, 41238955 - 41239166
Alignment:
Q  109 catgtggattttatgtgaaaaatgtgaaacaagatgttgagtttgaagaagatgagatgttgaagaagatgcttgtttgtatattttttctgggtaagtt 208  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41238955 catgtggattttaggtgaaaaatgtgaaacaagatgttgagtttgaagaagatgagatgttgaagaagatgcttgttggtatattttttctgggtaagtt 41239054  T
Q  209 gaaaagaaatcagttatggaaagaaagaaatgagatgagagtgatgagacaatactgaagtaaatgggaggtgcactggaagaaacaaaaaacattaaaa 308  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||    
T  41239055 gaaaagaaatcagttctggaaagaaagaaatgagatgagagtcatgagacaatactgaagtaaatggggggtgcacgggaagaaacaaaaaacattagaa 41239154  T
Q  309 ttctattttcag 320  Q
     |||||||||||    
T  41239155 atctattttcag 41239166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 164 - 320
Target Start/End: Original strand, 5398524 - 5398676
Alignment:
Q  164 gatgttgaagaagatgcttgtttgtatattttttctgggtaagttgaaaagaaatcagttatggaaagaaagaaatgagatgagagtgatgagacaatac 263  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||     ||||||||||| |||| ||||    
T  5398524 gatgttgaagaagatgcttgtttgtatattttttctgggtaacttggaaagaaatcaattctggaaagaaagaa-----atgagagtgataagaccatac 5398618  T
Q  264 tgaagtaaatgggaggtgcactggaagaaacaaa-aaacattaaaattctattttcag 320  Q
    ||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||    
T  5398619 tgaagtaaatggggggtgcactggaagaaacaaagaaacattagaaatctattttcag 5398676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 827 - 897
Target Start/End: Original strand, 49161439 - 49161509
Alignment:
Q  827 tcttggtgtgtttcaagaaataattatatgatttttggattataacactctgaattgttgtctgttcatag 897  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  49161439 tcttgttgtgtttcaagaaataattatatgatttttggattataaaactctgaattgttgtctgttcatag 49161509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 41238793 - 41238862
Alignment:
Q  14 atggacatcaatcaaatcaagagtttttatttcagatctgcagtttataggtctaatttggaataagaaa 83  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41238793 atggacatcgatcaaattaagagtttttatttcagatctgcagtttataggtctaatttggaataagaaa 41238862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 5398369 - 5398440
Alignment:
Q  14 atggacatcaat--caaatcaagagtttttatttcagatctgcagtttataggtctaatttggaataagaaa 83  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5398369 atggacatcaatatcaaatcaagagtttttatttcagatctgcagtttataggactaatttggaataagaaa 5398440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 49161858 - 49161794
Alignment:
Q  373 aaggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccatt 437  Q
    |||||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||||| ||||    
T  49161858 aaggtgaggtttagcatgggaaaggggaattgtttcccaccatgggaaagttttttatgagcatt 49161794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 374 - 428
Target Start/End: Complemental strand, 33455830 - 33455776
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    |||||||||||||||||||||| |||| |||||||||||||| |||||| |||||    
T  33455830 aggtggggtttagcatgggaaaggggaattgtttcccaccataggaaagtttttt 33455776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 43768807 - 43768734
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagag 448  Q
    ||||||||||||||||||||  | ||||||||| |||||||||||||| |||||   |||||| ||||||||||    
T  43768807 ggtggggtttagcatgggaatggagagttgttttccaccatgggaaagtttttttcaaccattagattaaagag 43768734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 51421725 - 51421676
Alignment:
Q  373 aaggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||||||||||||||||| |||| |||| |||||||||||||||||||||    
T  51421725 aaggtggggtttagcatgagaaaggggaattgtttcccaccatgggaaag 51421676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 33968181 - 33968227
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaa 421  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||    
T  33968181 ggtggggtttagcatgggaaagggaacttgtttcccaccatgggaaa 33968227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 428
Target Start/End: Original strand, 44021285 - 44021338
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||| |||||    
T  44021285 aggtggggtttagcatgggaaa-gaaagttgtttcccaccatgggaaagtttttt 44021338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 375 - 437
Target Start/End: Original strand, 45297549 - 45297611
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccatt 437  Q
    |||||||||||| |||||||| | ||||||||||||| |||||||||| ||||| | ||||||    
T  45297549 ggtggggtttagtatgggaaaggagagttgtttcccatcatgggaaagttttttttaaccatt 45297611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 374 - 422
Target Start/End: Original strand, 8652809 - 8652857
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||||||||||||||||||||| |||| | | |||||||||||||||||    
T  8652809 aggtggggtttagcatgggaaaggggaatcggttcccaccatgggaaag 8652857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 374 - 428
Target Start/End: Original strand, 33454865 - 33454919
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    |||||||||||||||||||||| |  | ||||||||||||||| ||||| |||||    
T  33454865 aggtggggtttagcatgggaaaggaaaattgtttcccaccatgagaaagtttttt 33454919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 43768033 - 43768079
Alignment:
Q  382 tttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    |||||||||||||  | |||||||||||||||||||||||| |||||    
T  43768033 tttagcatgggaatggagagttgtttcccaccatgggaaagtttttt 43768079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 380 - 422
Target Start/End: Complemental strand, 45501337 - 45501295
Alignment:
Q  380 ggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||    
T  45501337 ggtttagtatgggaaaggggagttgttttccaccatgggaaag 45501295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 302; Significance: 1e-169; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 384 - 797
Target Start/End: Complemental strand, 42651618 - 42651204
Alignment:
Q  384 tagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagagatgtacatattttataatagactgcctatattata 483  Q
    |||||||||||| || |||||||||||||||| |||||  ||||||||||||||| ||||||||| |||| |||||||||||||||||| |||||||||     
T  42651618 tagcatgggaaagggaagttgtttcccaccataggaaatttttttatgaccattcaattaaagaggtgtatatattttataatagactgtctatattatt 42651519  T
Q  484 nnnnnnn-ctttcttttcatattgtcttcaacccatgaatatcaaaattttacagagatctgaaatccatactttactaaagccttttcaagtaacatta 582  Q
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| ||  ||||||||    
T  42651518 ttttttttctttcttttcatattgtcttcaacccatgaataccaaaattttacagagatctgaaatccatgctttaccaaagcctttccagataacatta 42651419  T
Q  583 ataaacctaaaaacacattgattcttggccttttttgcaagaacctaaaaacacatgtaaataaaaattaccaagtctaagaataaaaaagtgtgggaac 682  Q
    ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  42651418 ataaatccaaaaacacattgattcttggccttttttgcaagaacctaaaaacacatgtaaataaaaattatcaagtctaagaatataaaagtgtgggaac 42651319  T
Q  683 attgatgaacaaaaaatcaagttgaagacaaacatcaaaatttgctcacggcaatgattttgattttgttttcctatgaattaacttgttttgtttttaa 782  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42651318 attgatgaacaaaaaatcaagttgaagacaaacatcaaaatttgctcacggcaatggttttgattttgttttcctatgaattaacttgttttgtttttaa 42651219  T
Q  783 cttaattggttcaac 797  Q
    |||||||||||||||    
T  42651218 cttaattggttcaac 42651204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 827 - 897
Target Start/End: Complemental strand, 42651174 - 42651104
Alignment:
Q  827 tcttggtgtgtttcaagaaataattatatgatttttggattataacactctgaattgttgtctgttcatag 897  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||    
T  42651174 tcttgttgtctttcaagaaataataatatgatttttggattataaaactctgaattgttgtctgtttatag 42651104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 376 - 422
Target Start/End: Original strand, 4789521 - 4789567
Alignment:
Q  376 gtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  4789521 gtggggtttagcatgggaaaggggagttgtttcccaccatgggaaag 4789567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 6804888 - 6804938
Alignment:
Q  372 aaaggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||||||||||||||||||||  |||||||||||||||||||| ||||    
T  6804888 aaaggtggggtttagcatgggaaagaggagttgtttcccaccatggaaaag 6804938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 374 - 448
Target Start/End: Original strand, 9923387 - 9923461
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagag 448  Q
    |||||||||||||||||||||  | ||||||||||||||||||| |||| |||||   |||||| ||||||||||    
T  9923387 aggtggggtttagcatgggaatggagagttgtttcccaccatggaaaagtttttttcaaccattagattaaagag 9923461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 468
Target Start/End: Complemental strand, 4790266 - 4790173
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagagatgtacatattttataatag 468  Q
    ||||||||||||| ||||||||  || ||||||||||| |||||||||| | ||| ||||||||  ||||||||| |||| | ||||||| ||||    
T  4790266 aggtggggtttaggatgggaaagagg-gttgtttcccatcatgggaaagttatttttgaccattaaattaaagaggtgtatagattttatgatag 4790173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 422
Target Start/End: Complemental strand, 26712435 - 26712389
Alignment:
Q  376 gtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||| ||||||||||||||| || |||||||||||||||||||||||    
T  26712435 gtggagtttagcatgggaaagggaagttgtttcccaccatgggaaag 26712389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 376 - 422
Target Start/End: Complemental strand, 26982173 - 26982127
Alignment:
Q  376 gtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||| ||||||||||||||| || |||||||||||||||||||||||    
T  26982173 gtggagtttagcatgggaaagggaagttgtttcccaccatgggaaag 26982127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 375 - 437
Target Start/End: Original strand, 42650757 - 42650819
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccatt 437  Q
    |||| |||||||||||||||| |||| ||||||  ||||||||||||| ||||||||| ||||    
T  42650757 ggtgaggtttagcatgggaaaggggaattgtttttcaccatgggaaagttttttatgagcatt 42650819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 374 - 422
Target Start/End: Complemental strand, 4555509 - 4555461
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||||||||||||||||||||| |||| ||||||| |||| |||||    
T  4555509 aggtggggtttagcatgggaaatggaagttctttcccatcatgtgaaag 4555461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 32944532 - 32944485
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||||||||||||||||||||||  | |||||||||||||||| ||||    
T  32944532 ggtggggtttagcatgggaaatgatacttgtttcccaccatggaaaag 32944485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 374 - 448
Target Start/End: Original strand, 1969778 - 1969852
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagag 448  Q
    |||||||||||||||||||||  | |||||||||   |||||||||||| |||||   |||||| ||||||||||    
T  1969778 aggtggggtttagcatgggaatggagagttgttttttaccatgggaaagtttttttcaaccattagattaaagag 1969852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 1970555 - 1970509
Alignment:
Q  382 tttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    |||||||||||||  | |||||||||||||||||||||||| |||||    
T  1970555 tttagcatgggaatggagagttgtttcccaccatgggaaagtttttt 1970509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 428
Target Start/End: Original strand, 12201377 - 12201430
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    |||||||||||| |||||||| | ||||||||||| |||||| ||||| |||||    
T  12201377 ggtggggtttagtatgggaaaggagagttgtttcctaccatgagaaagtttttt 12201430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 444
Target Start/End: Original strand, 35262452 - 35262521
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaa 444  Q
    ||||| ||||||||||||||| |  | |||||||| |||||||||||| | ||| |||||||| ||||||    
T  35262452 ggtggagtttagcatgggaaaggataattgtttcctaccatgggaaagttatttttgaccattagattaa 35262521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 375 - 749
Target Start/End: Original strand, 36844612 - 36844997
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagagatgtacatattttataatagactgcc 474  Q
    ||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| || |    
T  36844612 ggtggggtttagcatgggaaaggtgagttgtttcccaccatgagaaagatttttatgaccattcgattaaagaggtgtgcatattttataatagattgtc 36844711  T
Q  475 tatattatannnnnnn-ctttcttttcatattgtcttcaacccatgaatatca---------aaattttacagagatctgaaatccatactttactaaag 564  Q
    |||||||||        ||||||||||||||||||||||||||||||||| ||         | |||||| |||||||| |||||||| |||||| ||||    
T  36844712 tatattatattttttttctttcttttcatattgtcttcaacccatgaataccatgaataccaacattttatagagatctaaaatccatgctttaccaaag 36844811  T
Q  565 ccttttcaagtaacattaataaacctaaaaacacattgattcttggcctttt-ttgcaagaacctaaaaacacatgtaaataaaaattaccaagtctaag 663  Q
    ||||| || |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36844812 cctttccaggtaacattaataaacccaaaaacacattgattcttggcctttttttgcaagaacctaaaaacacatgtaaataaaaattaccaagtctaag 36844911  T
Q  664 aataaaaaagtgtgggaacattgatgaacaaaaaatcaagttgaagacaaacatcaaaatttgctcacggcaatgattttgatttt 749  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  36844912 aataaaaaagtgtgggaacattgatgaacaaaaaatcaagttgaagacaaacatcaaaatttgctcacggcaatggttttaatttt 36844997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 374 - 444
Target Start/End: Original strand, 24995851 - 24995921
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaa 444  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||  |||| |||||||| ||||||    
T  24995851 aggtggggtttagaatgggaaaggggagttgtttcccaccatgggaaagtattttttgaccattagattaa 24995921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 381 - 444
Target Start/End: Complemental strand, 24996725 - 24996662
Alignment:
Q  381 gtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaa 444  Q
    ||||||||||||||| ||||||||||||||||||||||||||  |||| |||||||| ||||||    
T  24996725 gtttagcatgggaaaggggagttgtttcccaccatgggaaagtattttttgaccattagattaa 24996662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 374 - 428
Target Start/End: Complemental strand, 29060788 - 29060734
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| |||||    
T  29060788 aggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaagtttttt 29060734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 374 - 422
Target Start/End: Original strand, 42607080 - 42607128
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||    
T  42607080 aggtggggtttagcatgggaaaggggaattgtttcccaccatgggaaag 42607128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 373 - 428
Target Start/End: Complemental strand, 40320460 - 40320405
Alignment:
Q  373 aaggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| |||| |||||    
T  40320460 aaggtggggtttagcatgggaaaggagagttgtttcccaccatggaaaagtttttt 40320405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 437
Target Start/End: Complemental strand, 32871188 - 32871126
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccatt 437  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||||| |||||  |||||||    
T  32871188 ggtggggtttagcatgggaatggggagttgtttcccaccataggaaagtttttttggaccatt 32871126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 40257844 - 40257803
Alignment:
Q  381 gtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  40257844 gtttagcatgggaaatgggagttgtttcccaccatgagaaag 40257803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 6730206 - 6730162
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatggg 418  Q
    |||||||||||||||||||||| || |||||||||||||||||||    
T  6730206 aggtggggtttagcatgggaaagggaagttgtttcccaccatggg 6730162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 443
Target Start/End: Complemental strand, 36845250 - 36845182
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgatta 443  Q
    |||| |||||||||||||||| |||| ||||||| || ||||| |||| |||||||||||||| |||||    
T  36845250 ggtgaggtttagcatgggaaaggggaattgtttctcatcatggaaaagttttttatgaccattagatta 36845182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 32548721 - 32548674
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||||||||||| ||||||||||  | |||||||||||||||||||||    
T  32548721 ggtggggtttagtatgggaaatgatacttgtttcccaccatgggaaag 32548674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 388 - 422
Target Start/End: Original strand, 27599224 - 27599258
Alignment:
Q  388 atgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||||||| ||||||||||||||||||||||||||    
T  27599224 atgggaaaggggagttgtttcccaccatgggaaag 27599258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 388 - 422
Target Start/End: Complemental strand, 27600130 - 27600096
Alignment:
Q  388 atgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||||||| ||||||||||||||||||||||||||    
T  27600130 atgggaaaggggagttgtttcccaccatgggaaag 27600096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 43846965 - 43846917
Alignment:
Q  373 aaggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||| ||||||| ||||||| ||||||| ||||||||||||||||||    
T  43846965 aaggtggcgtttagcctgggaaaggggagtt-tttcccaccatgggaaag 43846917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 416
Target Start/End: Original strand, 44540988 - 44541029
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatg 416  Q
    |||| |||||||||||||||| | ||||||||||||||||||    
T  44540988 ggtgaggtttagcatgggaaaggagagttgtttcccaccatg 44541029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 6e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 375 - 462
Target Start/End: Complemental strand, 27322635 - 27322548
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagagatgtacatatttta 462  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||| | ||  ||||||||  ||||||||| |||||| ||||||    
T  27322635 ggtggggtttaggatgggaaatgggagttgtttcccacgatgggaaagttattcttgaccattaaattaaagaggtgtacagatttta 27322548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 375 - 463
Target Start/End: Complemental strand, 35840578 - 35840490
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagagatgtacatattttat 463  Q
    ||||||||||||||||||||| || ||||||||||||| ||||||||| ||||| ||||  |  |||||||||| || ||| |||||||    
T  35840578 ggtggggtttagcatgggaaagggaagttgtttcccacgatgggaaagttttttttgactgtcagattaaagaggtgcacacattttat 35840490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 373 - 437
Target Start/End: Original strand, 35943074 - 35943138
Alignment:
Q  373 aaggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccatt 437  Q
    ||||||||||||||||||||||| || ||||||||||||||||||| ||| ||||| || |||||    
T  35943074 aaggtggggtttagcatgggaaagggaagttgtttcccaccatggggaagttttttttgtccatt 35943138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 374 - 448
Target Start/End: Complemental strand, 42346154 - 42346080
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagag 448  Q
    |||||||||||||||||||||  | ||||||||||||| |||||||||| |||||   |||||| ||||||||||    
T  42346154 aggtggggtttagcatgggaatggagagttgtttcccatcatgggaaagtttttttcaaccattagattaaagag 42346080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 374 - 422
Target Start/End: Complemental strand, 40451035 - 40450987
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||||    
T  40451035 aggtggggtttagtatgggaaatgtaagttgtttcccaccatgggaaag 40450987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 416
Target Start/End: Original strand, 27321598 - 27321640
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatg 416  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  27321598 aggtggggtttagcatgggaaataagagttgtttcccaccatg 27321640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 37562295 - 37562342
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||||||||||||||||| | || |||||||||||||| ||||||    
T  37562295 ggtggggtttagcatgggaaaggagaattgtttcccaccataggaaag 37562342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 6012968 - 6013014
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaa 420  Q
    |||||||||||||||||| ||| || |||| ||||||||||||||||    
T  6012968 aggtggggtttagcatggaaaaaggaagttctttcccaccatgggaa 6013014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 375 - 433
Target Start/End: Original strand, 35839722 - 35839780
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgac 433  Q
    ||||||||||||||||||||| || ||||||||||||  ||| ||||| ||||| ||||    
T  35839722 ggtggggtttagcatgggaaagggaagttgtttcccatgatgagaaagttttttttgac 35839780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 42345401 - 42345447
Alignment:
Q  382 tttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    |||||||||||||  | |||||||||||||||||||||||| |||||    
T  42345401 tttagcatgggaatggagagttgtttcccaccatgggaaagtttttt 42345447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 25970106 - 25970153
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25970106 ggtggggtttagcatgggaaaggggagttgtttcccaccatgggaaag 25970153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 373 - 428
Target Start/End: Complemental strand, 39429987 - 39429932
Alignment:
Q  373 aaggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||||| |||||    
T  39429987 aaggtggggtttagcatgggaatggagagttgtttcccaccatgggaaagtttttt 39429932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 374 - 428
Target Start/End: Complemental strand, 41261939 - 41261885
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    ||||||||||||| |||||||||| ||||||||||| |||||||||||| |||||    
T  41261939 aggtggggtttagtatgggaaatgagagttgtttcctaccatgggaaagtttttt 41261885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 232097 - 232050
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||||||||||| |||||||| || |||||||||||||||||||||||    
T  232097 ggtggggtttagtatgggaaagggaagttgtttcccaccatgggaaag 232050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 382 - 445
Target Start/End: Original strand, 36450735 - 36450798
Alignment:
Q  382 tttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaa 445  Q
    |||||||||||||| ||||||||||| |||||||||||||| |  ||||| ||||| |||||||    
T  36450735 tttagcatgggaaaggggagttgttttccaccatgggaaagttgattatgtccattggattaaa 36450798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 448
Target Start/End: Original strand, 34154793 - 34154867
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagag 448  Q
    |||||||||||||||||||||| |  | |||||||||||||||||||||  ||||   |||||| ||||||||||    
T  34154793 aggtggggtttagcatgggaaaagaaacttgtttcccaccatgggaaagtatttttcaaccatttgattaaagag 34154867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 428
Target Start/End: Complemental strand, 36014001 - 36013947
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    |||||| |||||||||||||||||  |||||||| |||||||||||||| |||||    
T  36014001 aggtggagtttagcatgggaaatgaaagttgtttaccaccatgggaaagtttttt 36013947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 33370925 - 33370876
Alignment:
Q  373 aaggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||||||||||||||||||| |  | |||||||||||||||||||||    
T  33370925 aaggtggggtttagcatgggaaaggatacttgtttcccaccatgggaaag 33370876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 376 - 445
Target Start/End: Complemental strand, 36451474 - 36451405
Alignment:
Q  376 gtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaa 445  Q
    ||||||||||||||||||||  ||||||||||| |||||||| |||| |  ||||| ||||| |||||||    
T  36451474 gtggggtttagcatgggaaagaggagttgtttctcaccatggaaaagttgattatgtccattagattaaa 36451405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 374 - 422
Target Start/End: Original strand, 23383309 - 23383357
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||||||||    
T  23383309 aggtggggtttagaatgagaaaggagagttgtttcccaccatgggaaag 23383357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 374 - 422
Target Start/End: Original strand, 33369908 - 33369956
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||| ||||||||||||||||  | |||||||||||||||||||||    
T  33369908 aggtgggatttagcatgggaaatgatatttgtttcccaccatgggaaag 33369956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 437
Target Start/End: Complemental strand, 34155675 - 34155612
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccatt 437  Q
    |||||||||||||||||||||| || | |||||| ||||||||| ||||  |||| ||||||||    
T  34155675 aggtggggtttagcatgggaaagggaacttgttttccaccatggaaaagtattttttgaccatt 34155612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 445
Target Start/End: Original strand, 41261121 - 41261192
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaa 445  Q
    ||||| |||||||||||||||| |  |||||||| |||||||||||||| ||||  | |||||| |||||||    
T  41261121 aggtgaggtttagcatgggaaaggaaagttgttttccaccatgggaaagtttttcttaaccattagattaaa 41261192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 374 - 448
Target Start/End: Original strand, 22061329 - 22061403
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagag 448  Q
    ||||| |||||||||| ||||  || |||||||| |||||||||||||| |||||   |||||| ||||||||||    
T  22061329 aggtgaggtttagcattggaaggggaagttgttttccaccatgggaaagtttttttcaaccattagattaaagag 22061403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 388 - 442
Target Start/End: Original strand, 34371475 - 34371529
Alignment:
Q  388 atgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgatt 442  Q
    |||||||| |||| ||||||||||||||||||||| ||||| || ||||| ||||    
T  34371475 atgggaaaggggaattgtttcccaccatgggaaagttttttttgtccattagatt 34371529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 428
Target Start/End: Complemental strand, 47326837 - 47326784
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    ||||| || |||||||||||| |  ||||||||||||||||||||||| |||||    
T  47326837 ggtggagtatagcatgggaaaggaaagttgtttcccaccatgggaaagtttttt 47326784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 428
Target Start/End: Complemental strand, 47341633 - 47341580
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    ||||| || |||||||||||| |  ||||||||||||||||||||||| |||||    
T  47341633 ggtggagtatagcatgggaaaggaaagttgtttcccaccatgggaaagtttttt 47341580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 422
Target Start/End: Complemental strand, 47377632 - 47377599
Alignment:
Q  389 tgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||| ||||||||||||||||||||||||||    
T  47377632 tgggaaaggggagttgtttcccaccatgggaaag 47377599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 373 - 428
Target Start/End: Complemental strand, 48835147 - 48835092
Alignment:
Q  373 aaggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||||| |||||    
T  48835147 aaggtggggtttagcatgggaaaggggaattgttttccaccatgggaaagtttttt 48835092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 374 - 422
Target Start/End: Original strand, 38931313 - 38931361
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||||||||||||| |||| |||| |||||||||||||||||||||    
T  38931313 aggtggggtttagcatgagaaaggggaattgtttcccaccatgggaaag 38931361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 374 - 445
Target Start/End: Original strand, 47334198 - 47334269
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaa 445  Q
    |||||||||||||| ||| ||| |||||||||||||||| ||||||||| |  ||||| ||||| |||||||    
T  47334198 aggtggggtttagcctggaaaaggggagttgtttcccacaatgggaaagttgattatgtccattagattaaa 47334269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 380 - 422
Target Start/End: Original strand, 30466187 - 30466229
Alignment:
Q  380 ggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||||||||||||||  ||||||||||||||||||||||||||    
T  30466187 ggtttagcatgggaatggggagttgtttcccaccatgggaaag 30466229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 2687777 - 2687729
Alignment:
Q  373 aaggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaa 421  Q
    ||||||||||||||||||||||| |  | ||||||||||||||||||||    
T  2687777 aaggtggggtttagcatgggaaaggataattgtttcccaccatgggaaa 2687729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 4641815 - 4641763
Alignment:
Q  370 tgaaaggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||| ||||| ||||||||||||||| |||| ||||||||||||| |||||||    
T  4641815 tgaagggtggagtttagcatgggaaaggggaattgtttcccaccaagggaaag 4641763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 375 - 463
Target Start/End: Original strand, 49420084 - 49420172
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagagatgtacatattttat 463  Q
    |||| ||||||| |||||||| |  ||||||||||||  ||||||||| ||||| |||||||| ||||||| || || ||| |||||||    
T  49420084 ggtgaggtttagtatgggaaaggaaagttgtttcccatgatgggaaagctttttttgaccattagattaaataggtgcacacattttat 49420172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 4640528 - 4640575
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||| ||||||||||| ||| |||| |||||||||||||||||||||    
T  4640528 ggtggagtttagcatggtaaaggggaattgtttcccaccatgggaaag 4640575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 428
Target Start/End: Original strand, 45922230 - 45922285
Alignment:
Q  373 aaggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    ||||||| ||||| ||||||||| ||  |||||||||||||||||||||| |||||    
T  45922230 aaggtggagtttaacatgggaaagggaggttgtttcccaccatgggaaagtttttt 45922285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 445
Target Start/End: Complemental strand, 47334941 - 47334878
Alignment:
Q  382 tttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaa 445  Q
    ||||| |||||||| ||||||||||||||||||| |||||| |  ||||| ||||| |||||||    
T  47334941 tttagtatgggaaaagggagttgtttcccaccataggaaagttgattatgtccattggattaaa 47334878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 50950944 - 50950897
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaa 421  Q
    |||||||||||||||||||||  || |||||||||||||||| |||||    
T  50950944 aggtggggtttagcatgggaatgggaagttgtttcccaccataggaaa 50950897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 374 - 428
Target Start/End: Original strand, 34716423 - 34716477
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    |||||||||||||||||||||  | ||||||||||||| ||||| |||| |||||    
T  34716423 aggtggggtttagcatgggaatggagagttgtttcccatcatggaaaagcttttt 34716477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 374 - 448
Target Start/End: Original strand, 42383719 - 42383792
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagag 448  Q
    ||||||||||||| ||||||||  | |||||||||| | |||||||||| ||||| | |||||| ||||||||||    
T  42383719 aggtggggtttagtatgggaaagagaagttgtttcctatcatgggaaag-ttttttttaccattagattaaagag 42383792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 375 - 417
Target Start/End: Original strand, 14012 - 14054
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgg 417  Q
    |||||| |||||||||||||| |||||||||||||||||||||    
T  14012 ggtgggatttagcatgggaaaggggagttgtttcccaccatgg 14054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 8384066 - 8384024
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgg 417  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  8384066 ggtggggtttagcatgggaaagtggagttgtttcccaccatgg 8384024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 29290123 - 29290170
Alignment:
Q  375 ggtggggtttagcatgggaaatgg-gagttgtttcccaccatgggaaag 422  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  29290123 ggtggggtttagcat-ggaaatggagagttgtttcccaccatgggaaag 29290170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 25371169 - 25371215
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaa 421  Q
    |||||||||||||||||||||  | | ||||||||||||||||||||    
T  25371169 ggtggggtttagcatgggaaagtgaacttgtttcccaccatgggaaa 25371215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 374 - 448
Target Start/End: Original strand, 28975339 - 28975413
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagatttttatgaccattcgattaaagag 448  Q
    |||||||||||||||||||||| | ||||||||||| | ||||| |||| ||| | | |||||| ||| ||||||    
T  28975339 aggtggggtttagcatgggaaaggagagttgtttcctatcatggaaaagttttatttaaccatttgatcaaagag 28975413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 428
Target Start/End: Original strand, 16764925 - 16764978
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaagattttt 428  Q
    ||||| ||||||||||||||| |  ||||||||||||||||||| ||| |||||    
T  16764925 ggtggagtttagcatgggaaaggaaagttgtttcccaccatggggaagtttttt 16764978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 422
Target Start/End: Original strand, 24125986 - 24126019
Alignment:
Q  389 tgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||| ||||||||||||||||||||||||||    
T  24125986 tgggaaaggggagttgtttcccaccatgggaaag 24126019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2003 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 374 - 422
Target Start/End: Complemental strand, 580 - 532
Alignment:
Q  374 aggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    ||||||| || ||||||||||| ||||||||||||||||||||| ||||    
T  580 aggtgggattaagcatgggaaaggggagttgtttcccaccatggaaaag 532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 43266 - 43219
Alignment:
Q  375 ggtggggtttagcatgggaaatgggagttgtttcccaccatgggaaag 422  Q
    |||||||||||| |||| ||| ||||||||||||||| ||||||||||    
T  43266 ggtggggtttagtatggaaaaggggagttgtttcccatcatgggaaag 43219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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