View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11149_high_8 (Length: 491)

Name: NF11149_high_8
Description: NF11149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11149_high_8
NF11149_high_8
[»] chr2 (8 HSPs)
chr2 (12-182)||(27645001-27645166)
chr2 (244-406)||(27645227-27645389)
chr2 (12-97)||(27549549-27549634)
chr2 (334-406)||(27645499-27645572)
chr2 (338-406)||(27554426-27554495)
chr2 (339-406)||(27554734-27554802)
chr2 (338-406)||(27554582-27554651)
chr2 (428-473)||(27645419-27645463)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 27645001 - 27645166
Alignment:
Q  12 cagagagaaagaaagaggaatagcgattgagaagaaaagggttaatgagattttggagtgaagaaggtttgtatttatagaccaaaaaggaacgggccac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27645001 cagagagaaagaaagaggaatagcgattgagaagaaaagggttaatgagattttggagtgaagaaggtttgtatttatagaccaaaaaggaacgggccac 27645100  T
Q  112 gcggtgtctcttctcttccttaacagagaagattttaaacccctaaattgatgaacaaaattaggatgggt 182  Q
    ||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27645101 gcggtg-----tctcttccttaacagagaagattttaaacccctaaattgatgaacaaaattaggatgggt 27645166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 244 - 406
Target Start/End: Original strand, 27645227 - 27645389
Alignment:
Q  244 tcagtttatctgtggttaatccaaaatttggtccaaaaatattttttgcgtgtgaattcttaccccttaagatattcctttnnnnnnnnngattttcatt 343  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||         |||||| |||    
T  27645227 tcagtttatctgtggttaattcaaaattcggttcaaaaatattttttgcgtgtgaattcttaccccttaaaatatttcttt-aaaaaaaagatttttatt 27645325  T
Q  344 aaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 406  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27645326 gaatgaaaaattaccatatacattatgaatacctttcgtatgattttgttcaaaggaggaaaag 27645389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 27549549 - 27549634
Alignment:
Q  12 cagagagaaagaaagaggaatagcgattgagaagaaaagggttaatgagattttggagtgaagaaggtttgtatttatagaccaaa 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  27549549 cagagagaaagaaagaggaatagcgattgagaagaaaagggttaatgagattttggggtgaagaaggtttgtctttatagaccaaa 27549634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 334 - 406
Target Start/End: Original strand, 27645499 - 27645572
Alignment:
Q  334 gattttcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 406  Q
    |||||||||||||||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||||||    
T  27645499 gattttcattaaatgaaaaattaccatatacatttcgaataccttttgtatgattttgttcaaaggaggaaaag 27645572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 27554495 - 27554426
Alignment:
Q  338 ttcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 406  Q
    ||||||||||||||||||| |||| |||||  |||||||||| |||||||||||||||||||||||||||    
T  27554495 ttcattaaatgaaaaattaacatatacatttggaataccttttgtatgattttgttcaaaggaggaaaag 27554426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 339 - 406
Target Start/End: Complemental strand, 27554802 - 27554734
Alignment:
Q  339 tcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 406  Q
    ||||||||| |||||||| |||| |||||| |||||| ||| |||||||||||||||||||||||||||    
T  27554802 tcattaaataaaaaattatcatatacattacgaatactttttgtatgattttgttcaaaggaggaaaag 27554734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 406
Target Start/End: Complemental strand, 27554651 - 27554582
Alignment:
Q  338 ttcattaaatgaaaaattaccataac-attatgaatacctttcgtatgattttgttcaaaggaggaaaag 406  Q
    ||||||||||||||||||| ||||   |||  |||||||||| ||||||||||||| |||||||||||||    
T  27554651 ttcattaaatgaaaaattatcatatttatttcgaataccttttgtatgattttgtttaaaggaggaaaag 27554582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 428 - 473
Target Start/End: Original strand, 27645419 - 27645463
Alignment:
Q  428 gtgtgtgaattctttactccttaagatatttatttaatgatagtaa 473  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||    
T  27645419 gtgtgtgaattctt-actctttaagatatttatttaatgatagtaa 27645463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University