View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11149_low_13 (Length: 252)
Name: NF11149_low_13
Description: NF11149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11149_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 2441163 - 2441061
Alignment:
| Q |
1 |
aatggccagaagagcttaaggtagggaggacacacaagagctgcttgttaatggcagtcaattccaccatcataatgatactacacagcaaggttaatga |
100 |
Q |
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| T |
2441163 |
aatggccagaagagcttaaggtagggaggacacacaagaactgcttgttaatggcagtcaattccaccatcataatgatactacacagcaaggttaatga |
2441064 |
T |
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| Q |
101 |
aag |
103 |
Q |
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||| |
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| T |
2441063 |
aag |
2441061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 2440830 - 2440792
Alignment:
| Q |
207 |
tgattattactccttcgttcattttcaattgtctctctg |
245 |
Q |
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| T |
2440830 |
tgattattactccttcattcattttcaattgtctttctg |
2440792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 147
Target Start/End: Complemental strand, 2441010 - 2440980
Alignment:
| Q |
117 |
ggctaggtttcgtgagaaacacgattaccat |
147 |
Q |
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| T |
2441010 |
ggctaggtttcgtgagaaacacgattaccat |
2440980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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