View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11149_low_6 (Length: 651)
Name: NF11149_low_6
Description: NF11149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11149_low_6 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 587; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 18 - 651
Target Start/End: Complemental strand, 46441681 - 46441047
Alignment:
| Q |
18 |
gttctatcatcaactagctgtctggtctccctcctcttttcaccatcattaccaacgtgagcaacaatacgagtatcaacaccaaaaatatcattcaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46441681 |
gttctatcatcaactagctgtctggtctccctcctcttttcaccatcattaccaacgtgagcaacaatacgagtatcaacaccaaaaatatcattcaaat |
46441582 |
T |
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| Q |
118 |
ttaaattgttcaaaatttcacttatatctagtttaattagaagtgaaacatcataattttcatgagcattattaaaagaacttcctaattcattaacttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46441581 |
ttaaattgttcaaaatttcacttatatctagtttaattagaagtgaaacatcataattttcatgagcattattaaaagaacttcctaattcattaacttg |
46441482 |
T |
|
| Q |
218 |
gggcacaccaa-cttgttgtaaaataattgggataaaattaggagcaaagtatacctcttcaggatgcaagtgagtaggaataacaccagctccatgaat |
316 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46441481 |
gggcacaccaaacttgttgtaaaataattgggataaaattagtagcaaagtatacctcttctggatgcaagtgagtaggaataacaccagctccatgaat |
46441382 |
T |
|
| Q |
317 |
atttgcaagacataactcttgctccttcatagccctgtgataattcagttgttcaatgatatccttaaaagctctaacacatacatcattgatgaacttg |
416 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46441381 |
atttgcaagatataactcttgctccttcatagccctgtgataattcagttgttcaatgatatccgtaaaagctctaacacatacatcattgatgaacttg |
46441282 |
T |
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| Q |
417 |
gtgatgccattgatcacttcgaggcgtttttcatggaaaaacttgagtgtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgagta |
516 |
Q |
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| T |
46441281 |
gtgatgtcattgatcacttcgaggcgtttttcatggaaaaacttgagtgtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgtgta |
46441182 |
T |
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| Q |
517 |
cataaacgttagggcaatgagaactctctatgaaattaaggatgacaacaacctcatcagcaaggttgtttagcattatgtccgaccaatgtgaaagaat |
616 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46441181 |
cataaacgttagggcaatgagaactctctaggaaattaaggatgacaacaacctcatcagcaaggttgtttagcattatgtccgaccaatgtgaaagaat |
46441082 |
T |
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| Q |
617 |
atttgctactaaattaccatctctgcttctccact |
651 |
Q |
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| T |
46441081 |
atttgctactaaattaccatctttacttatccact |
46441047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 315 - 632
Target Start/End: Original strand, 18331264 - 18331581
Alignment:
| Q |
315 |
atatttgcaagacataactcttgctccttcatagccctgtgataattcagttgttcaatgatatccttaaaagctctaacacatacatcattgatgaact |
414 |
Q |
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| T |
18331264 |
atatttgcaagatataaatcttgctctttcatagtcctatcataattcattttttcaataatatctgtaaaagctctaacacatacatcattgatgatct |
18331363 |
T |
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| Q |
415 |
tggtgatgccattgatcacttcgaggcgtttttcatggaaaaacttgagtgtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgag |
514 |
Q |
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| T |
18331364 |
tggtgacaccagtgatcacttcgaggcgtttttcatggaaaaactcaagcgtcacattgaaacgacagatgtgttgaatcaatggcaacttcgatttgcc |
18331463 |
T |
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| Q |
515 |
tacataaacgttagggcaatgagaactctctatgaaattaaggatgacaacaacctcatcagcaaggttgtttagcattatgtccgaccaatgtgaaaga |
614 |
Q |
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|||| || ||||||| |||| |||||| | ||| |||| |||||||||||| |||| |||||||||||| | ||||| | |||||||| ||| |||| |
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| T |
18331464 |
tacaaaagtgttagggtaatgggaactcccaatgcaattcaggatgacaacagcctcgtcagcaaggttgctaagcataacatccgaccattgttgaaga |
18331563 |
T |
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| Q |
615 |
atatttgctactaaatta |
632 |
Q |
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| T |
18331564 |
atctttgctactaaatta |
18331581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 317 - 580
Target Start/End: Complemental strand, 17616584 - 17616322
Alignment:
| Q |
317 |
atttgcaagacataactcttgctccttcatagccctgtgataattcagttgttcaatgatatccttaaaagctctaacacatacatcattgatgaacttg |
416 |
Q |
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|||||||||| ||||||||| ||| |||| | |||||| | ||| || ||||||||| ||||| |||||||||||| ||| |||| ||| |||||||| |
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| T |
17616584 |
atttgcaagatataactcttactctttcacaaccctgtca-aatgcacttgttcaattatatctgtaaaagctctaatacagacattattaatgaacttt |
17616486 |
T |
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| Q |
417 |
gtgatgccattgatcacttcgaggcgtttttcatggaaaaacttgagtgtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgagta |
516 |
Q |
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|||| || |||||| ||||||||||||||||||||||| | | |||||||| | ||||| ||| |||||||||||| |||| || || || |
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| T |
17616485 |
gtgacatcaatgatcagctcgaggcgtttttcatggaaaaattcaaaagtcacattgcgacgcatgatttgttgaatcaatagcaacttatttttcctta |
17616386 |
T |
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| Q |
517 |
cataaacgttagggcaatgagaactctctatgaaattaaggatgacaacaacctcatcagcaag |
580 |
Q |
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| || ||||||| | |||||||||| ||| |||||||||| ||||||| |||||||||||| |
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| T |
17616385 |
aaaaagagttagggtatcgagaactctcaatgcaattaaggattacaacaaactcatcagcaag |
17616322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 366 - 459
Target Start/End: Original strand, 722669 - 722762
Alignment:
| Q |
366 |
tgttcaatgatatccttaaaagctctaacacatacatcattgatgaacttggtgatgccattgatcacttcgaggcgtttttcatggaaaaact |
459 |
Q |
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| T |
722669 |
tgttcaataatatctgtaaacgctctaatacatacttcattgatgtactttgtgacatcagtgatcaattcgaggcgtttttcatggaaaaact |
722762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 365 - 592
Target Start/End: Complemental strand, 11574715 - 11574488
Alignment:
| Q |
365 |
ttgttcaatgatatccttaaaagctctaacacatacatcattgatgaacttggtgatgccattgatcacttcgaggcgtttttcatggaaaaacttgagt |
464 |
Q |
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||||||||| ||||||| ||||||| ||||||| ||||||||||| |||||||||| ||||||| |||||||||||||||| ||| ||||||| ||| |
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| T |
11574715 |
ttgttcaataatatcctcaaaagctataacacacacatcattgattaacttggtgacatcattgattacttcgaggcgttttttatgaaaaaactcaagt |
11574616 |
T |
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| Q |
465 |
gtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgagtacataaacgttagggcaatgagaactctctatgaaattaaggatgacaa |
564 |
Q |
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| T |
11574615 |
gtcaaattgcggcacaatatgtgttgaatcaatggcaaatttgattggcctacaaaagtgttagggtaatgagaaatttcgatgcaattcaggatgacaa |
11574516 |
T |
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| Q |
565 |
caacctcatcagcaaggttgtttagcat |
592 |
Q |
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| T |
11574515 |
caacctcatcagcaaggttgcttagcat |
11574488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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