View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11149_low_7 (Length: 573)
Name: NF11149_low_7
Description: NF11149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11149_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 17 - 568
Target Start/End: Original strand, 40927930 - 40928489
Alignment:
| Q |
17 |
catgaacttcaaatgtcattattatagagaaggactagaaccgtgaaattaactctcgtaaactaataaataacctatttgctttgcagtaattaatgaa |
116 |
Q |
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| T |
40927930 |
catgaacttcagatgtcattattatagagaaggactagaaccgtgaaattaactctcgtaaactaataaataacctatttgctttgcagtaactaatgaa |
40928029 |
T |
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| Q |
117 |
cacaa-------tttgtcgcaaaagaaaaatgatcataaactttacaagttgtcatacattgtagttgaaatttgacaaaaagacacgagctctaattaa |
209 |
Q |
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| T |
40928030 |
cataaaatgttatttgtcgcaaaagaaaa-tgatcataaactttacaagttgtcatacattgtagttgaaatttgacaaaaagacacgagctctaattaa |
40928128 |
T |
|
| Q |
210 |
tcaacacaattcatgatacattacgaggtatgtttctcgtaatgaccaacatttttcttgacgagcaacataaacacttattttcgtccctttctccctg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40928129 |
tcaacacaattcatgatacattacgaggtatgtttctcgtaatgaccaacatttttcttgacgagcaacataaacacttattttcgtccatttctccctg |
40928228 |
T |
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| Q |
310 |
catgcacttcaaatgtcgttaatattacttaagctaggatggaagttgagtaactctccaatacctcacac-nnnnnnnnnctttcaaaggtaatcctta |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40928229 |
catgcacttcaaatgtcgttaatattacttaagctaggatggaagttgagtaactctccaatacctcacacttttttttttctttcaaaggtaatcctta |
40928328 |
T |
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| Q |
409 |
caagtctcatgtgatatgtgtttc-actcattcaaccctgctttcatttttctttttgtccttgaagtgttagctcaatgataacatatttactttaaaa |
507 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40928329 |
caagtctgttgtgatatgtgtttcaactcattcaaccctgctttcatttttctttttgtccttgaagtgttagctcaatgataacatatttactttaaaa |
40928428 |
T |
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| Q |
508 |
cttcgaaggacaaaattcaaaacacttctaaaacaattgtaaaatgacagttcatctcact |
568 |
Q |
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| T |
40928429 |
cttcaaaggacaaaattcaaaacacttctaaaacaattgtaaaatgacagttcatatcact |
40928489 |
T |
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